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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
18
candidate regulatory elements
5
accessible chromatin
3
gene expression
2
chromatin state
2
variant allelic effects
1
binding sites
1
histone modifications
1
target gene predictions
Annotation Category
2
Genetic variant effects
1
Target gene links
1
cis-regulatory elements
Annotation type Category
2
DNase-seq
1
ChIP-seq
1
HiC
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
89
monocyte
52
HeLa-S3
39
H1-hESC
35
CD8-positive, alpha-beta T cell
19
HFFc6
18
K562
17
neural progenitor cell
15
CD14-positive monocyte
12
fibroblast
11
breast cancer cell
10
endothelial cell
10
pituitary stalk
9
gastric cancer cell
9
pericyte cell
8
GM12878
8
Rhabdomyosarcoma
8
hepatocyte
8
macrophage
8
neuroblastoma cell
8
smooth muscle cell
7
B-lymphoblastoid cell line
7
H9
7
diffuse intrinsic pontine glioma
7
esophageal adenocarcinoma
7
keratinocyte
7
lymphocyte
6
Chondroid Chordoma
6
adipocyte
6
dendritic cell
6
hESC cell
6
liposarcoma
6
neuroblastoma cell line
6
olfactory receptor cell
6
pancreatic ductal cell
6
squamous cell lung carcinoma
5
CyT49
5
T-cell acute lymphoblastic leukemia
5
cardiac muscle cell
5
heart left ventricle
5
liver
5
melanoma cell
5
osteosarcoma
5
pancreas
5
pancreatic acinar cell
4
B cell
4
HUES8
4
Jurkat
4
astrocyte
4
brain
4
cardiomyocytes (cardiac muscle cell)
4
heart
4
iPSC derived cell line
4
mammary epithelial cell
4
natural killer cell
4
neuronal stem cell
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic delta cell
4
psoas muscle
4
rhabdomyosarcoma cell
4
thymus
3
CD4-positive helper T cell
3
CD4-positive, alpha-beta T cell
3
EndoC_BH1
3
Ewing sarcoma
3
HepG2
3
MCF-7
3
T cell
3
U937
3
acute myeloid leukemia
3
adipose tissue
3
adrenal gland
3
basal cell
3
colon epithelial cell
3
coronary artery
3
cortical cell of adrenal gland
3
diffuse large B-cell lymphoma
3
embryonic stem cell
3
endothelial cell of umbilical vein
3
enterocyte
3
esophageal squamous cell carcinoma
3
fibroblast of cardiac tissue
3
foreskin fibroblast
3
glioblastoma cell
3
glioma cell
3
heart right ventricle
3
hepatic stellate cell
3
islet of Langerhans
3
kidney
3
lymphoblast
3
lymphoblastoid cell line
3
mammary gland epithelial cell
3
mast cell
3
mesenchymal stem cell
3
mesendoderm
3
myofibroblast cell
3
osteoblast
3
pancreatic A cell
3
pancreatic ductal adenocarcinoma
3
placenta
3
skeletal muscle myoblast
3
stomach
3
trophoblast cell
3
type B pancreatic cell
3
type II pneumocyte
2
cardiac fibroblast
2
muscle of leg
2
A549
2
B-lymphocyte
2
BJAB cell
2
COLO205
2
GM18505
2
GM18507
2
GM19099
2
GM19193
2
GM19238
2
GM19239
2
GM19240
2
H7-hESC
2
HAP-1
2
HCT-116 cell
2
HCT116
2
HS-SY-2 cell
2
HT-29
2
IMR-90
2
KARPAS-422 cell
2
LNCAP
2
LoVo cell
2
MCF 10A cell
2
MDA-MB-231 cell
2
MIN6
2
MM.1S
2
Mantle cell lymphoma
2
NCCIT cell
2
OCI-LY7
2
PC-9
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
RS4-11 cell
2
Rh-4 cell
2
Schwann cell
2
T-cell
2
THP-1
2
Th1 cell
2
activated CD4-positive, alpha-beta T cell
2
acute myeloid leukemia cell
2
aorta
2
blood vessel smooth muscle cell
2
body of pancreas
2
bronchial epithelial cell
2
cardiac precursors (cardiac muscle cell)
2
caudate nucleus
2
choroid plexus epithelial cell
2
chronic lymphocytic leukemia
2
colon adenocarcinoma
2
endometriosis
2
enteric smooth muscle cell
2
epithelial cell of esophagus
2
epithelial cell of prostate
2
epithelial ovarian cancer cell
2
erythroblast
2
erythroid progenitor cell
2
esophageal carcinoma
2
fibroblast cell line
2
gabaergic neuron
2
glioblastoma multiforme cancer stem cell
2
globus pallidus
2
glutamatergic neuron
2
goblet cell
2
hematopoietic cell
2
immortal foreskin-derived fibroblast cell line cell
2
immortal neural cell line cell
2
large intestine
2
luminal epithelial cell of mammary gland
2
lymphocyte of B lineage (iPSC)
2
mantle cell lymphoma cell
2
medulloblastoma cell line
2
megakaryocyte
2
memory B cell
2
mesothelial cell
2
metastatic melanoma
2
midbrain
2
multiple myeloma cell line
2
myotube
2
naive B cell
2
naive t cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
occipital lobe
2
ovary
2
pancreatic cell line
2
pancreatic endocrine cell
2
pancreatic polypeptide-secreting cell
2
parietal cell
2
peptic cell
2
plasma cell
2
pre-B acute lymphoblastic leukemia cell
2
preadipocyte
2
prostate gland
2
putamen
2
regulatory T cell
Organ
4
heart
Life stage
2
fetal
Date released
September, 2022
2
May, 2020
1
February, 2021
1
March, 2020
Software used
2
deltasvm
1
hiccups
1
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
month_released!
September, 2022
Showing 4 of 4 results
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Download
FileSet
DSR231NZC
released
Annotation file set
: Histone modifications annotation for Adipocyte Fetal_Heart from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR480PRT
released
Annotation file set
: Genetic variants with deltaSVM predictions in heart child DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR799HGW
released
Annotation file set
: Genetic variants with deltaSVM predictions in heart DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR771SNY
released
Annotation file set
: A target gene prediction annotation in heart of DSR786VPZ Hi-C
Lab:
AMP-T2D consortium
Project:
AMP