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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
18
candidate regulatory elements
6
accessible chromatin
3
binding sites
3
gene expression
3
histone modifications
3
target gene predictions
2
chromatin state
2
variant allelic effects
Annotation Category
3
Target gene links
2
Genetic variant effects
Annotation type Category
4
DNase-seq
2
ATAC-seq
2
H3K27ac ChIP-Seq
1
HiC
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
3
tissue
2
cell line
Biosample term
52
HeLa-S3
38
H1-hESC
19
HFFc6
17
K562
15
CD14-positive monocyte
10
fibroblast
10
pituitary stalk
9
endothelial cell
9
pericyte cell
8
smooth muscle cell
7
GM12878
7
H9
7
macrophage
6
dendritic cell
6
lymphocyte
6
olfactory receptor cell
5
CD8-positive, alpha-beta T cell
5
adipocyte
4
CyT49
4
HUES8
4
cardiomyocytes (cardiac muscle cell)
4
heart left ventricle
4
hepatocyte
4
iPSC derived cell line
4
keratinocyte
4
pancreas
4
pancreatic acinar cell
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic delta cell
4
pancreatic ductal cell
4
psoas muscle
3
CD4-positive, alpha-beta T cell
3
adipose tissue
3
adrenal gland
3
astrocyte
3
basal cell
3
cardiac muscle cell
3
colon epithelial cell
3
coronary artery
3
cortical cell of adrenal gland
3
endothelial cell of umbilical vein
3
enterocyte
3
heart
3
heart right ventricle
3
liver
3
monocyte
3
myofibroblast cell
3
pancreatic A cell
3
thymus
3
type B pancreatic cell
3
type II pneumocyte
2
cardiac fibroblast
2
muscle of leg
2
B cell
2
BJAB cell
2
CD4-positive helper T cell
2
EndoC_BH1
2
HCT116
2
HepG2
2
Jurkat
2
MCF 10A cell
2
MIN6
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Schwann cell
2
T cell
2
T-cell
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
aorta
2
blood vessel smooth muscle cell
2
body of pancreas
2
cardiac precursors (cardiac muscle cell)
2
enteric smooth muscle cell
2
epithelial cell of esophagus
2
erythroblast
2
gabaergic neuron
2
glutamatergic neuron
2
goblet cell
2
islet of Langerhans
2
luminal epithelial cell of mammary gland
2
lymphocyte of B lineage (iPSC)
2
mammary gland epithelial cell
2
mast cell
2
megakaryocyte
2
memory B cell
2
mesenchymal stem cell
2
mesendoderm
2
mesothelial cell
2
naive B cell
2
naive t cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell
2
ovary
2
pancreatic polypeptide-secreting cell
2
parietal cell
2
peptic cell
2
right atrium auricular region
2
sigmoid colon
2
skeletal muscle fiber
2
skeletal muscle myoblast
2
small intestine
2
smooth muscle cell of the esophagus
2
spleen
2
stomach
2
thyroid follicular cell
2
tibial artery
2
tibial nerve
2
trophoblast cell
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
A549
1
A673
1
Adipose SGBS cell line (adipocyte)
1
Ammon's horn
1
B cell, CD19-positive
1
B-lymphoblastoid cell line
1
CD56-positive, CD161-positive immature natural killer cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
GM18486
1
GM18505
1
GM18507
1
GM18508
1
GM18516
1
GM18522
1
GM19099
1
GM19141
1
GM19193
1
GM19204
1
GM19238
1
GM19239
1
GM19240
1
H7-hESC
1
HAP-1
1
HCT-116 cell
1
HT-29
1
Heart fetal (cardiac muscle cell)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
IMR-90
1
KARPAS-422 cell
1
LNCAP
1
Liver fetal (hepatocyte)
1
LoVo cell
1
MCF-7
1
MDA-MB-231 cell
1
MM.1S
1
NCCIT cell
1
OCI-LY7
1
PC-9
1
Panc1
1
Preadipose SGBS cell line (adipocyte)
1
SK-N-SH
1
Satellite Cells, Skeletal Muscle
1
activated CD8-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
alveolar macrophage
1
ascending aorta
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
basal cell of epidermis
1
beige adipocyte
1
bipolar neuron
1
bladder (urinary bladder)
1
brain
1
brain pericyte
1
breast epithelium
1
bronchial goblet cell
1
cardiac endothelial cell
1
cardiac ventricle
1
caudate nucleus
1
cell
1
cerebellum (Hemisphere)
1
choroid plexus epithelial cell
1
ciliated cell
1
club cell
1
colon goblet cell
1
common myeloid progenitor, CD34-positive
1
conventional dendritic cell
1
dorsolateral prefrontal cortex
1
eccrine cell
1
embryonic stem cell
1
endocardial cell
1
endothelial cell of lymphatic vessel
1
enteric neuron
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
epithelial cell of prostate
1
epithelial cell of proximal tubule
1
esophagus
1
fat cell
1
fibroblast cell line
Organ
3
heart
Life stage
2
fetal
Date released
September, 2022
2
May, 2020
2
May, 2021
1
March, 2020
Software used
2
abc
2
deltasvm
1
hiccups
Lab
3
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
month_released!
September, 2022
Showing 5 of 5 results
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Download
FileSet
DSR670BGX
released
Annotation file set
: enhancer-gene predicton of Jurkat_anti-CD3_PMA_4hr-Engreitz from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR028TMR
released
Annotation file set
: enhancer-gene predicton of Jurkat-Engreitz from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR480PRT
released
Annotation file set
: Genetic variants with deltaSVM predictions in heart child DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR799HGW
released
Annotation file set
: Genetic variants with deltaSVM predictions in heart DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR771SNY
released
Annotation file set
: A target gene prediction annotation in heart of DSR786VPZ Hi-C
Lab:
AMP-T2D consortium
Project:
AMP