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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
chromatin state
1
gene expression
Annotation Category
1
Gene expression levels
1
cis-regulatory elements
Annotation type Category
3
ChIP-seq
DNase-seq
1
RNA-seq
Available data
1
bed bed9
1
tsv
File set status
2
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
2
Homo sapiens
Biosample type
2
tissue
Biosample term
102
monocyte
23
retina
20
pigmented layer of retina
18
A549
18
hepatocyte
17
islet of Langerhans
16
epithelial cell of proximal tubule
15
subcutaneous adipose tissue
14
endothelial cell of hepatic sinusoid
13
CD8-positive, alpha-beta T cell
13
glomerular endothelial cell
11
adipose tissue
11
liver
10
body of pancreas
10
common myeloid progenitor, CD34-positive
10
omental fat pad
10
tibial nerve
9
endothelial cell
9
hematopoietic multipotent progenitor cell
8
ascending aorta
8
caudate nucleus
8
coronary artery
8
right atrium auricular region
8
tibial artery
7
adrenal gland
7
cerebellum
7
frontal cortex
7
heart left ventricle
7
kidney loop of Henle thin ascending limb epithelial cell
7
regulatory T cell
7
substantia nigra
6
Ammon's horn
6
B cell
6
K562
6
T-helper 1 cell
6
putamen
6
right lobe of liver
6
stomach
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD8-positive, alpha-beta memory T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
MCF-7
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
amygdala
5
anterior cingulate cortex
5
aorta
5
cerebellum (Hemisphere)
5
gastrocnemius medialis(Muscle - Skeletal)
5
glomerular visceral epithelial cell
5
hypothalamus
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
left ventricle myocardium
5
mature neutrophil
5
mononuclear cell
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
natural killer cell
5
neutrophil
5
nucleus accumbens
5
pancreatic alpha cell
5
pancreatic beta cell
5
spleen
4
T cell
4
T-helper 17 cell
4
angular gyrus
4
bone tissue
4
cartilage tissue
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
gastrocnemius medialis
4
glutamatergic neuron
4
inflammatory macrophage
4
kidney connecting tubule epithelial cell
4
kidney interstitial cell
4
ovary
4
pancreas
4
pancreatic delta cell
4
psoas muscle
4
sigmoid colon
4
temporal lobe
4
thyroid gland
4
transverse colon
3
CD14-positive monocyte
3
CD4-positive, alpha-beta T cell
3
CD4-positive, alpha-beta memory T cell
3
Cycling Mononuclear Phagocyte
3
HeLa-S3
3
Mast Cell
3
Peyer's patch
3
adult endothelial progenitor cell
3
alternatively activated macrophage
3
endocrine pancreas
3
endometrium adenocarcinoma
3
immortal human breast epithelial cell line cell
3
kidney
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney glomerular epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
kidney tubule cell
3
layer of hippocampus
3
macrophage
3
mesangial cell
3
pancreatic polypeptide-secreting cell
3
right cardiac atrium
3
skeletal muscle satellite cell
3
skeletal muscle tissue
3
testis
3
thoracic aorta
3
upper lobe of left lung
3
vagina
3
visceral abdominal adipose tissue
2
Brodmann (1909) area 46
2
CD14-positive, CD16-negative classical monocyte
2
GM12878
2
Kupffer cell
2
LNCaP clone FGC
2
T-helper 2 cell
2
T47D
2
adipocyte
2
articular chondrocyte
2
blood
2
breast epithelium
2
cardiomyocytes (cardiac muscle cell)
2
cingulate gyrus
2
colonic mucosa
2
duodenal mucosa
2
esophagus
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
fibroblast
2
fibroblast of breast
2
gamma-delta T cell
2
heart
2
heart right ventricle
2
hepatic stellate cell
2
kidney inner medulla collecting duct intercalated cell
2
lower leg skin
2
lung
2
lymphocyte of B lineage (iPSC)
2
mammary gland epithelial cell
2
mesenchymal stem cell
2
mucosa of rectum
2
muscle cell
Organ
2
heart
Life stage
20
embryonic
3
fetal
2
adult
1
child
Date released
1
February, 2021
1
September, 2022
Software used
1
chromhmm
1
r
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
annotation_type_category!
DNase-seq
Showing 2 of 2 results
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Download
FileSet
DSR821WIY
released
Annotation file set
: Chromatin states for BSS00514 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR384FIT
released
Annotation file set
: Gene expression of heart (atria and ventricle)
Lab:
AMP-T2D consortium
Project:
AMP