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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
3
cis-regulatory elements
Gene expression levels
1
Target gene links
Annotation type Category
3
ChIP-seq
3
DNase-seq
Available data
3
bed bed3+
1
bed bed9
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
89
monocyte
57
A549
40
common myeloid progenitor, CD34-positive
35
hematopoietic multipotent progenitor cell
24
adrenal gland
24
liver
23
B cell
22
retina
21
adipose tissue
21
stomach
20
body of pancreas
20
pigmented layer of retina
19
K562
19
MCF-7
19
spleen
19
tibial nerve
18
CD8-positive, alpha-beta T cell
17
caudate nucleus
16
gastrocnemius medialis
16
omental fat pad
16
sigmoid colon
16
thyroid gland
16
transverse colon
15
CD8-positive, alpha-beta memory T cell
15
mononuclear cell
14
ascending aorta
14
heart left ventricle
14
pancreas
13
Peyer's patch
13
coronary artery
13
substantia nigra
13
tibial artery
13
upper lobe of left lung
12
CD14-positive monocyte
12
cerebellum
12
endocrine pancreas
12
islet of Langerhans
12
layer of hippocampus
12
natural killer cell
12
ovary
12
psoas muscle
12
right atrium auricular region
11
HeLa-S3
11
aorta
11
frontal cortex
11
subcutaneous adipose tissue
11
temporal lobe
10
T cell
10
angular gyrus
10
endothelial cell of hepatic sinusoid
10
esophagus squamous epithelium
10
lower leg skin
10
putamen
9
Ammon's horn
9
CD4-positive, alpha-beta memory T cell
9
breast epithelium
9
endometrium adenocarcinoma
9
esophagus muscularis mucosa
9
immortal human breast epithelial cell line cell
9
kidney
9
parathyroid adenoma
9
skeletal muscle tissue
9
thoracic aorta
8
CD4-positive, alpha-beta T cell
8
T-helper 1 cell
8
cingulate gyrus
8
colonic mucosa
8
duodenal mucosa
8
esophagus
8
fibroblast of breast
8
kidney tubule cell
8
mucosa of rectum
8
muscle layer of colon
8
muscle layer of duodenum
8
myoepithelial cell of mammary gland
8
prostate gland
8
right lobe of liver
8
small intestine
8
stomach smooth muscle
8
testis
8
vagina
7
LNCaP clone FGC
7
T-helper 2 cell
7
T47D
7
gastroesophageal sphincter
7
regulatory T cell
6
Brodmann (1909) area 46
6
globus pallidus
6
kidney glomerular epithelial cell
6
mammary gland epithelial cell
6
middle frontal gyrus
6
muscle cell
6
naive T cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
right cardiac atrium
5
GM12878
5
cerebellar cortex
5
dermis blood vessel endothelial cell
5
fibroblast of lung
5
heart right ventricle
5
hepatic stellate cell
5
hepatocyte
5
lung
5
mature neutrophil
5
medulla oblongata
5
mesenchymal stem cell
5
midbrain
5
neutrophil
5
pons
5
skeletal muscle satellite cell
5
subcutaneous abdominal adipose tissue
5
superior temporal gyrus
5
uterus
4
A172
4
ACC112
4
ACHN
4
C1 segment of cervical spinal cord
4
C4-2B
4
Caki2
4
DOHH2
4
GM04503
4
GM04504
4
GM23248
4
GM23338
4
H4
4
H54
4
HAP-1
4
HCT116
4
HL-60
4
HS-27A
4
HS-5
4
HT-29
4
HT1080
4
KBM-7
4
KMS-11
4
LHCN-M2
4
Loucy
4
M059J
4
MM.1S
4
NB4
4
NCI-H929
4
OCI-LY1
4
OCI-LY3
4
OCI-LY7
4
PC-3
4
RCC 7860
4
RPMI7951
4
RPMI8226
4
RWPE1
4
RWPE2
4
SJSA1
4
SK-MEL-5
4
SU-DHL-6
4
SW480
4
adipocyte
4
amygdala
4
anterior cingulate cortex
4
bipolar neuron
4
cerebellum (Hemisphere)
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
fibroblast of dermis
4
gastrocnemius medialis(Muscle - Skeletal)
4
glutamatergic neuron
4
heart
4
hypothalamus
4
iPS-11a
4
iPS-15b
4
iPS-18a
4
iPS-18c
4
iPS-20b
4
left ventricle myocardium
4
mucosa of stomach
4
nucleus accumbens
4
occipital lobe
4
pancreatic alpha cell
4
pancreatic beta cell
4
peripheral blood mononuclear cell
4
skeletal muscle myoblast
4
urinary bladder
3
8988T
3
AG08395 cell
3
AG08396 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
AG20443
3
COLO829
3
Caco-2 cell
3
GM10248
3
GM10266
3
GM12875
3
GM19238
3
GM19239
3
GM19240
3
HPDE6-E6E7
3
HuH-7
3
HuH-7.5
3
KARPAS-422 cell
3
LoVo cell
3
MCF 10A
Organ
4
heart
Life stage
70
embryonic
4
adult
4
child
3
fetal
1
young adult
Date released
3
September, 2022
1
January, 2020
Software used
2
r
1
chromhmm
1
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_category!
Gene expression levels
Showing 4 of 4 results
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Download
FileSet
DSR853SVT
released
Annotation file set
: Candidate regulatory elements for BSS00514 heart from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR144ZJD
released
Annotation file set
: Target gene predictions for BSS00514 heart from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR821WIY
released
Annotation file set
: Chromatin states for BSS00514 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR994QRK
released
Annotation file set
: Accessible chromatin annotation of heart adult from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP