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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
accessible chromatin
1
candidate regulatory elements
1
chromatin state
1
gene expression
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Gene expression levels
1
Target gene links
Annotation type Category
3
ChIP-seq
2
DNase-seq
1
RNA-seq
Available data
2
bed bed3+
1
bed bed9
1
tsv
File set status
4
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
102
monocyte
57
A549
40
common myeloid progenitor, CD34-positive
35
hematopoietic multipotent progenitor cell
25
adrenal gland
24
adipose tissue
24
liver
23
B cell
22
body of pancreas
22
stomach
20
spleen
20
tibial nerve
19
CD8-positive, alpha-beta T cell
19
K562
19
MCF-7
17
caudate nucleus
16
epithelial cell of proximal tubule
16
gastrocnemius medialis
16
omental fat pad
16
sigmoid colon
16
subcutaneous adipose tissue
16
thyroid gland
16
transverse colon
15
CD8-positive, alpha-beta memory T cell
15
mononuclear cell
14
ascending aorta
14
natural killer cell
14
substantia nigra
13
Peyer's patch
13
coronary artery
13
glomerular endothelial cell
13
heart left ventricle
13
hepatocyte
13
ovary
13
right atrium auricular region
13
tibial artery
13
upper lobe of left lung
12
CD14-positive monocyte
12
T-helper 1 cell
12
cerebellum
12
endocrine pancreas
12
islet of Langerhans
12
layer of hippocampus
12
psoas muscle
12
regulatory T cell
11
HeLa-S3
11
aorta
11
frontal cortex
11
pancreas
11
temporal lobe
10
angular gyrus
10
endothelial cell of hepatic sinusoid
10
esophagus squamous epithelium
10
lower leg skin
10
putamen
9
Ammon's horn
9
CD4-positive, alpha-beta memory T cell
9
T cell
9
breast epithelium
9
endometrium adenocarcinoma
9
esophagus muscularis mucosa
9
immortal human breast epithelial cell line cell
9
kidney
9
parathyroid adenoma
9
right lobe of liver
9
skeletal muscle tissue
9
testis
9
thoracic aorta
9
vagina
8
CD4-positive, alpha-beta T cell
8
cingulate gyrus
8
colonic mucosa
8
duodenal mucosa
8
esophagus
8
fibroblast of breast
8
kidney tubule cell
8
mucosa of rectum
8
muscle layer of colon
8
muscle layer of duodenum
8
myoepithelial cell of mammary gland
8
prostate gland
8
small intestine
8
stomach smooth muscle
7
LNCaP clone FGC
7
T-helper 2 cell
7
T47D
7
endothelial cell
7
gastroesophageal sphincter
7
kidney loop of Henle thin ascending limb epithelial cell
6
Brodmann (1909) area 46
6
kidney glomerular epithelial cell
6
lung
6
mammary gland epithelial cell
6
muscle cell
6
naive T cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
right cardiac atrium
6
skeletal muscle satellite cell
6
uterus
5
C1 segment of cervical spinal cord
5
GM12878
5
adipocyte
5
amygdala
5
anterior cingulate cortex
5
cerebellum (Hemisphere)
5
dermis blood vessel endothelial cell
5
fibroblast of lung
5
gastrocnemius medialis(Muscle - Skeletal)
5
globus pallidus
5
heart right ventricle
5
hepatic stellate cell
5
hypothalamus
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
left ventricle myocardium
5
mature neutrophil
5
mesenchymal stem cell
5
middle frontal gyrus
5
neutrophil
5
nucleus accumbens
5
skeletal muscle myoblast
5
subcutaneous abdominal adipose tissue
4
A172
4
ACC112
4
ACHN
4
C4-2B
4
Caki2
4
DOHH2
4
GM04503
4
GM04504
4
GM23248
4
GM23338
4
H4
4
H54
4
HAP-1
4
HCT116
4
HL-60
4
HS-27A
4
HS-5
4
HT-29
4
HT1080
4
KBM-7
4
KMS-11
4
LHCN-M2
4
Loucy
4
M059J
4
MM.1S
4
NB4
4
NCI-H929
4
OCI-LY1
4
OCI-LY3
4
OCI-LY7
4
PC-3
4
RCC 7860
4
RPMI7951
4
RPMI8226
4
RWPE1
4
RWPE2
4
SJSA1
4
SK-MEL-5
4
SU-DHL-6
4
SW480
4
T-helper 17 cell
4
bipolar neuron
4
bone tissue
4
cerebellar cortex
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
fibroblast of dermis
4
glomerular visceral epithelial cell
4
heart
4
iPS-11a
4
iPS-15b
4
iPS-18a
4
iPS-18c
4
iPS-20b
4
inflammatory macrophage
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
medulla oblongata
4
midbrain
4
mucosa of stomach
4
peripheral blood mononuclear cell
4
pons
4
superior temporal gyrus
4
urinary bladder
3
8988T
3
AG08395 cell
3
AG08396 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
AG20443
3
COLO829
3
Caco-2 cell
3
GM10248
3
GM10266
3
GM12875
3
GM19238
3
GM19239
3
GM19240
Organ
4
heart
Life stage
70
embryonic
4
adult
4
fetal
3
child
1
young adult
Date released
3
September, 2022
1
February, 2021
Software used
3
r
1
chromhmm
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type!
accessible chromatin
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR853SVT
released
Annotation file set
: Candidate regulatory elements for BSS00514 heart from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR144ZJD
released
Annotation file set
: Target gene predictions for BSS00514 heart from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR821WIY
released
Annotation file set
: Chromatin states for BSS00514 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR384FIT
released
Annotation file set
: Gene expression of heart (atria and ventricle)
Lab:
AMP-T2D consortium
Project:
AMP