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Schema
Citing CMDGA
Clear Filters
Annotation type
1
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
3
DNase-seq
1
RNA-seq
Available data
2
bed bed3+
1
bed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
86
monocyte
57
A549
40
common myeloid progenitor, CD34-positive
35
hematopoietic multipotent progenitor cell
24
adrenal gland
23
B cell
21
stomach
19
K562
19
MCF-7
19
adipose tissue
19
liver
19
spleen
18
CD8-positive, alpha-beta T cell
16
body of pancreas
16
gastrocnemius medialis
16
sigmoid colon
16
thyroid gland
16
transverse colon
15
CD8-positive, alpha-beta memory T cell
15
mononuclear cell
13
Peyer's patch
13
tibial nerve
13
upper lobe of left lung
12
CD14-positive monocyte
12
endocrine pancreas
12
layer of hippocampus
12
natural killer cell
12
ovary
11
HeLa-S3
11
caudate nucleus
11
psoas muscle
11
temporal lobe
10
angular gyrus
10
aorta
10
esophagus squamous epithelium
10
heart left ventricle
10
lower leg skin
9
CD4-positive, alpha-beta memory T cell
9
T cell
9
ascending aorta
9
breast epithelium
9
endometrium adenocarcinoma
9
esophagus muscularis mucosa
9
immortal human breast epithelial cell line cell
9
kidney
9
omental fat pad
9
pancreas
9
parathyroid adenoma
9
substantia nigra
9
thoracic aorta
8
CD4-positive, alpha-beta T cell
8
T-helper 1 cell
8
cingulate gyrus
8
colonic mucosa
8
coronary artery
8
duodenal mucosa
8
esophagus
8
fibroblast of breast
8
mucosa of rectum
8
muscle layer of colon
8
muscle layer of duodenum
8
myoepithelial cell of mammary gland
8
prostate gland
8
skeletal muscle tissue
8
small intestine
8
stomach smooth muscle
8
testis
8
tibial artery
8
vagina
7
LNCaP clone FGC
7
T-helper 2 cell
7
T47D
7
cerebellum
7
gastroesophageal sphincter
7
kidney tubule cell
7
regulatory T cell
7
right atrium auricular region
6
Brodmann (1909) area 46
6
endothelial cell of hepatic sinusoid
6
frontal cortex
6
mammary gland epithelial cell
6
muscle cell
6
naive T cell
6
right cardiac atrium
5
GM12878
5
dermis blood vessel endothelial cell
5
fibroblast of lung
5
lung
5
mature neutrophil
5
mesenchymal stem cell
5
skeletal muscle satellite cell
5
subcutaneous abdominal adipose tissue
5
uterus
4
A172
4
ACC112
4
ACHN
4
Ammon's horn
4
C4-2B
4
Caki2
4
DOHH2
4
GM04503
4
GM04504
4
GM23248
4
GM23338
4
H4
4
H54
4
HAP-1
4
HCT116
4
HL-60
4
HS-27A
4
HS-5
4
HT-29
4
HT1080
4
KBM-7
4
KMS-11
4
LHCN-M2
4
Loucy
4
M059J
4
MM.1S
4
NB4
4
NCI-H929
4
OCI-LY1
4
OCI-LY3
4
OCI-LY7
4
PC-3
4
RCC 7860
4
RPMI7951
4
RPMI8226
4
RWPE1
4
RWPE2
4
SJSA1
4
SK-MEL-5
4
SU-DHL-6
4
SW480
4
adipocyte
4
bipolar neuron
4
cerebellar cortex
4
fibroblast of dermis
4
globus pallidus
4
heart right ventricle
4
iPS-11a
4
iPS-15b
4
iPS-18a
4
iPS-18c
4
iPS-20b
4
kidney glomerular epithelial cell
4
middle frontal gyrus
4
mucosa of stomach
4
peripheral blood mononuclear cell
4
putamen
4
right lobe of liver
4
skeletal muscle myoblast
4
urinary bladder
3
8988T
3
AG08395 cell
3
AG08396 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
AG20443
3
COLO829
3
Caco-2 cell
3
GM10248
3
GM10266
3
GM12875
3
GM19238
3
GM19239
3
GM19240
3
HPDE6-E6E7
3
HuH-7
3
HuH-7.5
3
KARPAS-422 cell
3
LoVo cell
3
MCF 10A
3
NCI-H226 cell
3
VCaP cell
3
fibroblast of cardiac tissue
3
heart
3
hepatic stellate cell
3
iPS-NIHi11
3
iPS-NIHi7
3
inferior parietal cortex
3
inflammatory macrophage
3
luminal epithelial cell of mammary gland
3
mammary stem cell
3
medulla oblongata
3
midbrain
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
occipital lobe
3
olfactory neurosphere cell line
3
pons
3
rectum smooth muscle tissue
3
renal cell carcinoma
3
superior temporal gyrus
3
suprapubic skin
2
AG10803
2
CD14-positive, CD16-negative classical monocyte
2
LNCAP
2
T-cell
2
alternatively activated macrophage
Organ
3
heart
Life stage
69
embryonic
3
adult
3
child
1
fetal
1
young adult
Date released
3
September, 2022
Software used
2
r
1
chromhmm
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
Showing 3 of 3 results
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Download
FileSet
DSR853SVT
released
Annotation file set
: Candidate regulatory elements for BSS00514 heart from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR144ZJD
released
Annotation file set
: Target gene predictions for BSS00514 heart from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR821WIY
released
Annotation file set
: Chromatin states for BSS00514 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP