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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
variant allelic effects
1
chromatin state
1
target gene predictions
Annotation Category
2
Genetic variant effects
1
Target gene links
1
cis-regulatory elements
Annotation type Category
2
DNase-seq
1
ChIP-seq
1
HiC
Available data
3
bed bed3+
1
bed bed9
1
bigBed bed9
File set status
3
released
1
revoked
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
6
islet of Langerhans
6
tibial artery
6
tibial nerve
5
cardiomyocytes (cardiac muscle cell)
5
coronary artery
5
hepatocyte
5
right atrium auricular region
4
Ammon's horn
4
ascending aorta
4
body of pancreas
4
caudate nucleus
4
cerebellum (Hemisphere)
4
frontal cortex
4
heart
4
heart left ventricle
4
putamen
4
subcutaneous adipose tissue
3
B cell
3
C1 segment of cervical spinal cord
3
CD8-positive, alpha-beta T cell
3
amygdala
3
anterior cingulate cortex
3
cardiac precursors (cardiac muscle cell)
3
cerebellum
3
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
3
endothelial cell of umbilical vein
3
gastrocnemius medialis(Muscle - Skeletal)
3
heart right ventricle
3
hypothalamus
3
left ventricle myocardium
3
monocyte
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
nucleus accumbens
3
omental fat pad
3
pancreas
3
psoas muscle
3
right lobe of liver
3
substantia nigra
2
cardiac fibroblast
2
muscle of leg
2
CD4-positive, alpha-beta T cell
2
EndoC_BH1
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
adipose tissue
2
aorta
2
central memory CD8-positive, alpha-beta T cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
gamma-delta T cell
2
left renal cortex interstitium
2
liver
2
lymphocyte of B lineage (iPSC)
2
mature natural killer cell
2
medulla oblongata
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
midbrain
2
naive regulatory T cell
2
regulatory T cell
2
right kidney
2
right renal cortex interstitium
2
skeletal muscle myoblast
2
thymus
1
brain microvascular endothelial cell
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
Adipose SGBS cell line (adipocyte)
1
B-lymphoblastoid cell line
1
Heart fetal (cardiac muscle cell)
1
HepG2
1
Liver fetal (hepatocyte)
1
Pancreatic islets
1
Preadipose SGBS cell line (adipocyte)
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
activated CD4-positive, alpha-beta T cell
1
adrenal gland
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
bladder (urinary bladder)
1
brain
1
brain pericyte
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
dorsolateral prefrontal cortex
1
embryonic stem cell
1
epithelial cell of proximal tubule
1
erythroblast
1
esophagus
1
fibroblast cell line
1
gastric (mucosa of stomach)
1
globus pallidus
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
hepatic stellate cell
1
immature natural killer cell
1
inflammatory macrophage
1
kidney
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
left cardiac atrium
1
left renal pelvis
1
lung
1
macrophage
1
megakaryocyte
1
mesenchymal stem cell
1
mesendoderm
1
middle frontal gyrus
1
muscle of arm
1
myeloid dendritic cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
natural killer cell
1
neural progenitor cell
1
neutrophil
1
occipital lobe
1
ovary
1
plasma cell
1
plasmacytoid dendritic cell
1
pons
1
renal cortex interstitium
1
renal cortical epithelial cell
1
renal pelvis
1
retina
1
right cardiac atrium
1
right renal pelvis
1
sigmoid colon
1
skeletal muscle cell
1
small intestine
1
smooth muscle cell of the brain vasculature
1
spleen
1
superior temporal gyrus
1
thoracic aorta
1
trophoblast
1
white adipose cell
Organ
4
heart
Life stage
3
fetal
Date released
57
September, 2022
21
February, 2021
3
May, 2020
2
January, 2020
2
June, 2020
1
April, 2019
1
August, 2021
1
February, 2020
1
March, 2020
1
November, 2019
Software used
2
deltasvm
1
chromhmm
1
hiccups
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
biosample_term_name!
AG09319 cell
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR480PRT
released
Annotation file set
: Genetic variants with deltaSVM predictions in heart child DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR799HGW
released
Annotation file set
: Genetic variants with deltaSVM predictions in heart DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR771SNY
released
Annotation file set
: A target gene prediction annotation in heart of DSR786VPZ Hi-C
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR032VAF
revoked
Annotation file set
: ChromHMM 5-state model for heart fetal from 5 GSE63634 ChIP-seq data (very large promoter regions, revoked)
Lab:
AMP-T2D consortium
Project:
AMP