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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
1
gene expression
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Gene expression levels
1
Target gene links
Annotation type Category
3
ChIP-seq
3
DNase-seq
1
RNA-seq
Available data
3
bed bed3+
1
bed bed9
1
bigWig
1
tsv
File set status
5
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
102
monocyte
57
A549
40
common myeloid progenitor, CD34-positive
35
hematopoietic multipotent progenitor cell
25
adrenal gland
25
liver
24
adipose tissue
23
B cell
23
retina
22
body of pancreas
22
stomach
21
tibial nerve
20
pigmented layer of retina
20
spleen
19
CD8-positive, alpha-beta T cell
19
K562
19
MCF-7
18
caudate nucleus
18
hepatocyte
18
omental fat pad
17
islet of Langerhans
17
subcutaneous adipose tissue
16
epithelial cell of proximal tubule
16
gastrocnemius medialis
16
sigmoid colon
16
thyroid gland
16
transverse colon
15
CD8-positive, alpha-beta memory T cell
15
ascending aorta
15
heart left ventricle
15
mononuclear cell
14
coronary artery
14
endothelial cell of hepatic sinusoid
14
natural killer cell
14
pancreas
14
right atrium auricular region
14
substantia nigra
14
tibial artery
13
Peyer's patch
13
cerebellum
13
glomerular endothelial cell
13
ovary
13
upper lobe of left lung
12
CD14-positive monocyte
12
T-helper 1 cell
12
endocrine pancreas
12
frontal cortex
12
layer of hippocampus
12
psoas muscle
12
regulatory T cell
11
HeLa-S3
11
aorta
11
putamen
11
temporal lobe
10
Ammon's horn
10
T cell
10
angular gyrus
10
esophagus squamous epithelium
10
lower leg skin
9
CD4-positive, alpha-beta memory T cell
9
breast epithelium
9
endometrium adenocarcinoma
9
endothelial cell
9
esophagus muscularis mucosa
9
immortal human breast epithelial cell line cell
9
kidney
9
kidney tubule cell
9
parathyroid adenoma
9
right lobe of liver
9
skeletal muscle tissue
9
testis
9
thoracic aorta
9
vagina
CD4-positive, alpha-beta T cell
8
cingulate gyrus
8
colonic mucosa
8
duodenal mucosa
8
esophagus
8
fibroblast of breast
8
mucosa of rectum
8
muscle layer of colon
8
muscle layer of duodenum
8
myoepithelial cell of mammary gland
8
prostate gland
8
small intestine
8
stomach smooth muscle
7
LNCaP clone FGC
7
T-helper 2 cell
7
T47D
7
gastroesophageal sphincter
7
kidney glomerular epithelial cell
7
kidney loop of Henle thin ascending limb epithelial cell
6
Brodmann (1909) area 46
6
globus pallidus
6
hepatic stellate cell
6
lung
6
mammary gland epithelial cell
6
middle frontal gyrus
6
muscle cell
6
naive T cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
right cardiac atrium
6
skeletal muscle satellite cell
6
uterus
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
GM12878
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
adipocyte
5
amygdala
5
anterior cingulate cortex
5
cerebellar cortex
5
cerebellum (Hemisphere)
5
dermis blood vessel endothelial cell
5
fibroblast of lung
5
gastrocnemius medialis(Muscle - Skeletal)
5
glomerular visceral epithelial cell
5
heart
5
heart right ventricle
5
hypothalamus
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
left ventricle myocardium
5
mature neutrophil
5
medulla oblongata
5
mesenchymal stem cell
5
midbrain
5
neutrophil
5
nucleus accumbens
5
pancreatic alpha cell
5
pancreatic beta cell
5
pons
5
skeletal muscle myoblast
5
subcutaneous abdominal adipose tissue
5
superior temporal gyrus
4
A172
4
ACC112
4
ACHN
4
C4-2B
4
Caki2
4
DOHH2
4
GM04503
4
GM04504
4
GM23248
4
GM23338
4
H4
Organ
5
heart
Life stage
71
embryonic
5
adult
4
child
4
fetal
1
young adult
Date released
3
September, 2022
1
February, 2021
1
January, 2020
Software used
3
r
1
chromhmm
1
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
biosample_term_name!
CD4-positive, alpha-beta T cell
epithelial cell of prostate
Showing 5 of 5 results
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Download
FileSet
DSR853SVT
released
Annotation file set
: Candidate regulatory elements for BSS00514 heart from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR144ZJD
released
Annotation file set
: Target gene predictions for BSS00514 heart from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR821WIY
released
Annotation file set
: Chromatin states for BSS00514 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR384FIT
released
Annotation file set
: Gene expression of heart (atria and ventricle)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR994QRK
released
Annotation file set
: Accessible chromatin annotation of heart adult from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP