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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
chromatin state
Annotation Category
2
cis-regulatory elements
Annotation type Category
1
ChIP-seq
1
DNase-seq
Available data
1
bed bed3+
1
bed bed9
1
bigWig
File set status
2
released
Genome assembly (visualization)
2
GRCh38
2
hg19
Organism
2
Homo sapiens
Biosample type
2
tissue
Biosample term
89
monocyte
22
retina
21
A549
20
common myeloid progenitor, CD34-positive
20
pigmented layer of retina
18
CD8-positive, alpha-beta T cell
17
hematopoietic multipotent progenitor cell
15
liver
14
endothelial cell of hepatic sinusoid
13
tibial nerve
12
adrenal gland
12
body of pancreas
12
islet of Langerhans
12
omental fat pad
12
subcutaneous adipose tissue
11
B cell
11
caudate nucleus
11
spleen
11
stomach
10
ascending aorta
10
heart left ventricle
10
hepatocyte
10
pancreas
9
MCF-7
9
adipose tissue
9
coronary artery
9
substantia nigra
9
tibial artery
CD4-positive, alpha-beta T cell
8
cerebellum
8
gastrocnemius medialis
8
putamen
8
right atrium auricular region
8
sigmoid colon
8
thyroid gland
8
transverse colon
7
Ammon's horn
7
K562
7
Peyer's patch
7
aorta
7
frontal cortex
7
temporal lobe
7
upper lobe of left lung
6
CD14-positive monocyte
6
angular gyrus
6
endocrine pancreas
6
esophagus squamous epithelium
6
layer of hippocampus
6
lower leg skin
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
natural killer cell
6
ovary
6
psoas muscle
6
right lobe of liver
5
CD8-positive, alpha-beta memory T cell
5
HeLa-S3
5
breast epithelium
5
esophagus muscularis mucosa
5
gastroesophageal sphincter
5
kidney
5
mature neutrophil
5
mononuclear cell
5
neutrophil
5
parathyroid adenoma
5
skeletal muscle tissue
5
subcutaneous abdominal adipose tissue
5
thoracic aorta
4
C1 segment of cervical spinal cord
4
T cell
4
T-helper 1 cell
4
amygdala
4
anterior cingulate cortex
4
cartilage tissue
4
cerebellum (Hemisphere)
4
cingulate gyrus
4
colonic mucosa
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
duodenal mucosa
4
esophagus
4
fibroblast of breast
4
gastrocnemius medialis(Muscle - Skeletal)
4
globus pallidus
4
glutamatergic neuron
4
hypothalamus
4
kidney glomerular epithelial cell
4
kidney tubule cell
4
left ventricle myocardium
4
middle frontal gyrus
4
mucosa of rectum
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
nucleus accumbens
4
pancreatic alpha cell
4
pancreatic beta cell
4
peripheral blood mononuclear cell
4
prostate gland
4
right cardiac atrium
4
small intestine
4
stomach smooth muscle
4
testis
4
vagina
3
CD4-positive, alpha-beta memory T cell
3
GM12878
3
LNCaP clone FGC
3
MCF 10A
3
T-helper 2 cell
3
T47D
3
cerebellar cortex
3
dermis blood vessel endothelial cell
3
endometrium adenocarcinoma
3
fibroblast of lung
3
heart right ventricle
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
inflammatory macrophage
3
lung
3
medulla oblongata
3
mesenchymal stem cell
3
midbrain
3
pancreatic delta cell
3
pons
3
regulatory T cell
3
skeletal muscle satellite cell
3
superior temporal gyrus
3
suprapubic skin
3
uterus
2
cardiac fibroblast
2
A172
2
ACC112
2
ACHN
2
AG10803
2
Adaptive / Maladaptive / Repairing Fibroblast
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
2
Afferent / Efferent Arteriole Endothelial Cell
2
B Cell
2
Brodmann (1909) area 46
2
C4-2B
2
CD14-positive, CD16-negative classical monocyte
2
Caki2
2
Classical Dendritic Cell
2
Connecting Tubule Cell
2
Connecting Tubule Intercalated Cell Type A
2
Connecting Tubule Principal Cell
2
Cortical Thick Ascending Limb Cell
2
Cycling Endothelial Cell
2
Cycling Epithelial Cell
2
Cycling T Cell
2
Cytotoxic T Cell
2
DOHH2
2
Degenerative Connecting Tubule Cell
2
Degenerative Connecting Tubule Cell / Principal Cell
2
Degenerative Cortical Thick Ascending Limb Cell
2
Degenerative Distal Convoluted Tubule Cell
2
Degenerative Intercalated Cell Type A
2
Degenerative Peritubular Capillary Endothelial Cell
2
Degenerative Principal Cell
2
Degenerative Proximal Tubule Epithelial Cell
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
2
Degenerative Vascular Smooth Muscle Cell
2
Descending Thin Limb Cell Type 1
2
Distal Convoluted Tubule Cell Type 1
2
Fibroblast
2
GM04503
2
GM04504
2
GM23248
2
GM23338
2
Glomerular Capillary Endothelial Cell
2
H4
2
H54
2
HAP-1
2
HCT116
2
HL-60
2
HS-27A
2
HS-5
2
HT-29
2
HT1080
2
Intercalated Cell Type A
2
Intercalated Cell Type B
2
KBM-7
2
KMS-11
2
LHCN-M2
2
LNCAP
2
Loucy
2
Lymphatic Endothelial Cell
2
M059J
2
M2 Macrophage
2
MM.1S
2
Medullary Thick Ascending Limb Cell
2
Mesangial Cell
2
Monocyte
2
Monocyte-derived Cell
2
Myofibroblast
2
NB4
2
NCI-H929
2
Natural Killer T Cell
2
Natural Killer T Cell Type 1
2
Natural Killer T Cell Type 2
Organ
2
heart
Life stage
36
embryonic
3
fetal
2
adult
2
child
1
young adult
Date released
1
January, 2020
1
September, 2022
Software used
r
1
chromhmm
1
macs
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
biosample_term_name!
CD4-positive, alpha-beta T cell
software_used.software.name!
r
Showing 2 of 2 results
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Download
FileSet
DSR821WIY
released
Annotation file set
: Chromatin states for BSS00514 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR994QRK
released
Annotation file set
: Accessible chromatin annotation of heart adult from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP