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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
variant allelic effects
1
chromatin state
Annotation Category
3
cis-regulatory elements
2
Genetic variant effects
Annotation type Category
4
DNase-seq
1
ChIP-seq
Available data
4
bed bed3+
2
bigWig
1
bed bed9
1
bigBed bed9
File set status
4
released
1
revoked
Genome assembly (visualization)
5
hg19
3
GRCh38
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
5
cardiac fibroblast
5
heart
5
tibial artery
4
coronary artery
4
endothelial cell of umbilical vein
4
heart left ventricle
4
islet of Langerhans
4
right atrium auricular region
4
tibial nerve
3
B cell
3
CD8-positive, alpha-beta T cell
3
brain
3
cardiac muscle cell
3
caudate nucleus
3
frontal cortex
3
kidney
3
monocyte
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
pancreas
3
putamen
2
hindlimb muscle
2
muscle of leg
2
Ammon's horn
2
CD4-positive, alpha-beta T cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SGBS preadipocytes
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
adipose tissue
2
aorta
2
ascending aorta
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
body of pancreas
2
brain pericyte
2
central memory CD8-positive, alpha-beta T cell
2
cerebellum (Hemisphere)
2
choroid plexus epithelial cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
epithelial cell of proximal tubule
2
gamma-delta T cell
2
globus pallidus
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
heart right ventricle
2
hepatic stellate cell
2
hepatocyte
2
kidney capillary endothelial cell
2
kidney epithelial cell
2
kidney glomerular epithelial cell
2
left cardiac atrium
2
left renal cortex interstitium
2
left renal pelvis
2
mature natural killer cell
2
medulla oblongata
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
midbrain
2
middle frontal gyrus
muscle of arm
2
naive regulatory T cell
2
occipital lobe
2
omental fat pad
2
pons
2
regulatory T cell
2
renal cortex interstitium
2
renal cortical epithelial cell
2
renal pelvis
2
retina
2
right kidney
2
right renal cortex interstitium
2
right renal pelvis
2
skeletal muscle cell
2
skeletal muscle myoblast
2
smooth muscle cell of the brain vasculature
2
subcutaneous adipose tissue
2
superior temporal gyrus
1
brain microvascular endothelial cell
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
Adipose SGBS cell line (adipocyte)
1
C1 segment of cervical spinal cord
1
EndoC_BH1
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
Pancreatic islets
1
Preadipose SGBS cell line (adipocyte)
1
activated CD4-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
amygdala
1
anterior cingulate cortex
1
brain microvascular endothelial cell
1
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
cerebellar cortex
1
cerebellum
1
erythroblast
1
fetal heart
1
forelimb muscle
1
hypothalamus
1
immature natural killer cell
1
inflammatory macrophage
1
kidney tubule cell
1
lymphocyte of B lineage (iPSC)
1
macrophage
1
megakaryocyte
1
muscle of leg
1
myeloid dendritic cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
natural killer cell
1
neutrophil
1
nucleus accumbens
1
plasma cell
1
plasmacytoid dendritic cell
1
retinal pigment epithelial cell
1
right cardiac atrium
1
right lobe of liver
1
substantia nigra
1
thoracic aorta
1
thymus
Organ
5
heart
Life stage
2
fetal
1
adult
1
child
Date released
57
September, 2022
21
February, 2021
3
May, 2020
2
January, 2020
2
June, 2020
1
April, 2019
1
August, 2021
1
February, 2020
1
March, 2020
1
November, 2019
Software used
2
deltasvm
2
macs
1
chromhmm
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
biosample_term_name!
muscle of arm
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR480PRT
released
Annotation file set
: Genetic variants with deltaSVM predictions in heart child DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR799HGW
released
Annotation file set
: Genetic variants with deltaSVM predictions in heart DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR032VAF
revoked
Annotation file set
: ChromHMM 5-state model for heart fetal from 5 GSE63634 ChIP-seq data (very large promoter regions, revoked)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR270JSX
released
Annotation file set
: Accessible chromatin annotation of heart child from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR994QRK
released
Annotation file set
: Accessible chromatin annotation of heart adult from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP