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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
1
gene expression
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Gene expression levels
1
Target gene links
Annotation type Category
3
ChIP-seq
3
DNase-seq
1
RNA-seq
Available data
3
bed bed3+
1
bed bed9
1
bigWig
1
tsv
File set status
5
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
25
adrenal gland
25
liver
24
adipose tissue
23
retina
22
body of pancreas
22
stomach
21
tibial nerve
20
pigmented layer of retina
20
spleen
18
caudate nucleus
18
omental fat pad
17
islet of Langerhans
17
subcutaneous adipose tissue
16
gastrocnemius medialis
16
sigmoid colon
16
thyroid gland
16
transverse colon
15
ascending aorta
15
heart left ventricle
14
coronary artery
14
pancreas
14
right atrium auricular region
14
substantia nigra
14
tibial artery
13
Peyer's patch
13
cerebellum
13
ovary
13
upper lobe of left lung
12
endocrine pancreas
12
frontal cortex
12
layer of hippocampus
12
psoas muscle
11
aorta
11
putamen
11
temporal lobe
10
Ammon's horn
10
angular gyrus
10
esophagus squamous epithelium
10
lower leg skin
breast epithelium
9
esophagus muscularis mucosa
9
kidney
9
parathyroid adenoma
9
right lobe of liver
9
skeletal muscle tissue
9
testis
9
thoracic aorta
9
vagina
8
cingulate gyrus
8
colonic mucosa
8
duodenal mucosa
8
esophagus
8
mucosa of rectum
8
muscle layer of colon
8
muscle layer of duodenum
8
prostate gland
8
small intestine
8
stomach smooth muscle
7
gastroesophageal sphincter
6
Brodmann (1909) area 46
6
globus pallidus
6
lung
6
middle frontal gyrus
6
right cardiac atrium
6
uterus
5
C1 segment of cervical spinal cord
5
amygdala
5
anterior cingulate cortex
5
cerebellar cortex
5
cerebellum (Hemisphere)
5
gastrocnemius medialis(Muscle - Skeletal)
5
heart
5
heart right ventricle
5
hypothalamus
5
left ventricle myocardium
5
medulla oblongata
5
midbrain
5
nucleus accumbens
5
pons
5
subcutaneous abdominal adipose tissue
5
superior temporal gyrus
4
bone tissue
4
cartilage tissue
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
mucosa of stomach
4
occipital lobe
4
urinary bladder
3
inferior parietal cortex
3
rectum smooth muscle tissue
3
suprapubic skin
3
visceral abdominal adipose tissue
2
blood
2
middle frontal area 46
1
aorta wall
1
bladder
1
breast - mammary tissue
1
cerebrospinal fluid
1
cervix - ectocervix
1
cervix - endocervix
1
colon - sigmoid
1
colon - transverse
1
dorsolateral prefrontal cortex
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
fallopian tube
1
kidney - cortex
1
kidney - medulla
1
minor salivary gland
1
nephron tubule
1
pituitary
1
prostate
1
rectal smooth muscle tissue
1
renal glomerulus
1
skeletal muscle
1
skin - not sun exposed (suprapubic)
1
skin - sun exposed (lower leg)
1
small intestine - terminal Ileum
1
synovial joint
1
thyroid
1
whole blood
Organ
5
heart
Life stage
71
embryonic
5
adult
4
child
4
fetal
1
young adult
Date released
3
September, 2022
1
February, 2021
1
January, 2020
Software used
3
r
1
chromhmm
1
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
biosample_term_name!
breast epithelium
Showing 5 of 5 results
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Download
FileSet
DSR853SVT
released
Annotation file set
: Candidate regulatory elements for BSS00514 heart from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR144ZJD
released
Annotation file set
: Target gene predictions for BSS00514 heart from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR821WIY
released
Annotation file set
: Chromatin states for BSS00514 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR384FIT
released
Annotation file set
: Gene expression of heart (atria and ventricle)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR994QRK
released
Annotation file set
: Accessible chromatin annotation of heart adult from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP