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Citing CMDGA
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Annotation type
2
gene expression
1
chromatin state
1
target gene predictions
1
variant allelic effects
Annotation Category
2
Gene expression levels
1
Genetic variant effects
1
Target gene links
1
cis-regulatory elements
Annotation type Category
1
ChIP-seq
1
DNase-seq
1
HiC
1
RNA-seq
1
scRNA-seq
Available data
2
bed bed3+
2
tsv
1
bed bed9
1
bigBed bed9
File set status
4
released
1
revoked
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
4
tissue
1
primary cell
Biosample term
4
brain
4
heart
4
nephron progenitor
3
S-shaped body
3
kidney
3
kidney interstitial cell
2
endothelial cell of hepatic sinusoid
2
mesangial cell
2
renal vesicle
1
cardiac fibroblast
1
hindlimb muscle
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
cerebellum
1
diencephalon
1
endothelial cell
1
epithelial cell of distal tubule
1
fetal heart
1
forelimb muscle
1
frontal cortex
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
heart left ventricle
1
heart right ventricle
1
hepatoblast
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
left cardiac atrium
1
left renal pelvis
1
leukocyte
1
liver
1
meso-epithelial cell
1
metanephros
1
muscle of arm
1
muscle of leg
1
occipital lobe
1
parietal lobe
1
pericardium fibroblast
1
proximal tubule
1
renal connecting tubule
1
renal cortex interstitium
1
renal pelvis
1
retina
1
right renal pelvis
1
skeletal muscle tissue
1
temporal lobe
1
ureteric bud
Organ
4
heart
1
epithelium
1
kidney
Life stage
71
embryonic
5
adult
5
fetal
4
child
1
young adult
Date released
2
May, 2020
1
February, 2020
1
February, 2021
1
March, 2020
Software used
2
r
1
chromhmm
1
deltasvm
1
hiccups
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
Showing 5 of 5 results
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Download
FileSet
DSR777KYP
released
Annotation file set
: Gene expression levels (pseudobulks UMIs) of ErPrT from GSE114530 scRNAseq fetal kidney
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR480PRT
released
Annotation file set
: Genetic variants with deltaSVM predictions in heart child DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR771SNY
released
Annotation file set
: A target gene prediction annotation in heart of DSR786VPZ Hi-C
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR670YAY
released
Annotation file set
: Gene expression levels of Heart fetal from RNA-seq (GSE63634) + RNA-seq (ENCODE) + RNA-seq (GSE106690)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR032VAF
revoked
Annotation file set
: ChromHMM 5-state model for heart fetal from 5 GSE63634 ChIP-seq data (very large promoter regions, revoked)
Lab:
AMP-T2D consortium
Project:
AMP