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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
chromatin state
1
gene expression
1
histone modifications
1
target gene predictions
Annotation Category
2
cis-regulatory elements
Annotation type Category
1
ChIP-seq
1
DNase-seq
Available data
1
bed bed3+
1
bed bed9
File set status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
2
Homo sapiens
Biosample type
2
in vitro differentiated cells
Biosample term
24
heart
23
kidney
20
brain
18
monocyte
17
muscle of arm
17
muscle of leg
17
stomach
15
lung
15
placenta
14
endothelial cell
14
fibroblast
14
large intestine
14
neural progenitor cell
14
small intestine
13
excitatory neuron
13
left lung
13
muscle of back
12
macrophage
12
right lung
12
thymus
11
adipocyte
11
embryonic stem cell
11
pericyte cell
11
renal pelvis
11
right kidney
10
B cell
10
renal cortex interstitium
10
retinal pigment epithelial cell
9
adrenal gland
9
astrocyte
9
left kidney
9
smooth muscle cell
9
spinal cord
8
EndoC_BH1
7
T cell
7
endothelial cell of umbilical vein
7
erythroblast
7
left cardiac atrium
7
liver
7
pancreatic ductal cell
6
CD4-positive, alpha-beta memory T cell
6
CD8-positive, alpha-beta T cell
6
SGBS preadipocytes
6
fibroblast of cardiac tissue
6
heart left ventricle
6
pancreatic acinar cell
6
pancreatic beta cell
6
regulatory T cell
6
trophoblast cell
5
T-helper 17 cell
5
chondrocyte
5
foreskin keratinocyte
5
heart right ventricle
5
hepatocyte
5
inhibitory neuron
5
islet of Langerhans
5
keratinocyte
5
osteoblast
5
pancreatic alpha cell
5
retina
5
skeletal muscle fiber
5
skeletal muscle satellite cell
5
skin fibroblast
4
T-helper 1 cell
4
chorion membrane
4
chorionic villus
4
colon epithelial cell
4
memory B cell
4
mesenchymal stem cell
4
muscle of trunk
4
natural killer cell
4
pancreatic delta cell
4
skeletal muscle myoblast
4
spleen
4
type II pneumocyte
3
CD14-positive, CD16-negative classical monocyte
3
H1-hESC
3
HepG2
3
NAMALWA cell
3
SK-N-DZ
3
T-helper 2 cell
3
bronchial epithelial cell
3
cardiac muscle cell
3
choroid plexus epithelial cell
3
common myeloid progenitor, CD34-positive
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
epithelial cell of prostate
3
eye
3
fibroblast of lung
3
foreskin fibroblast
3
glomerular endothelial cell
3
glomerular visceral epithelial cell
3
left renal cortex interstitium
3
left renal pelvis
3
limb
3
mammary gland epithelial cell
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neurosphere
3
pancreas
3
pancreatic stellate cell
3
renal cortical epithelial cell
3
right renal cortex interstitium
3
right renal pelvis
3
tongue
3
trophoblast
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
cardiac fibroblast
2
22Rv1
2
AG04449 cell
2
AG04450 cell
2
BE(2)-C
2
BJ cell
2
CD1c-positive myeloid dendritic cell
2
CD4-positive helper T cell
2
CD8-positive, alpha-beta memory T cell
2
CMK
2
DG-75 cell
2
Daoy
2
ESC derived cell line
2
GM03348
2
GM06990
2
GM12864
2
GM12865
2
GM18507
2
H7-hESC
2
HEK293
2
HUES6
2
IMR-90
2
K562
2
KARPAS-422 cell
2
L1-S8
2
L1-S8R
2
MG63
2
Muller cell
2
NT2-D1 cell
2
PC-9
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Rh-4 cell
2
SJCRH30
2
SK-N-MC
2
SK-N-SH
2
SUDHL5
2
T follicular helper cell
2
U-266 cell
2
WERI-Rb-1
2
Z-138
2
acute myeloid leukemia cell
2
adipose tissue
2
adipose-derived stem cell
2
alternatively activated macrophage
2
aortic endothelial cell
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
basal cell
2
blood vessel smooth muscle cell
2
bone marrow cell
2
brain microvascular endothelial cell
2
brain pericyte
2
capillary endothelial cell
2
caudate nucleus
2
central memory CD8-positive, alpha-beta T cell
2
ciliated cell
2
club cell
2
coronary artery
2
dermis lymphatic vessel endothelial cell
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
embryonic facial prominence
2
endocardial cell
2
endodermal cell
2
endothelial cell of hepatic sinusoid
2
enteric neuron
2
enteric smooth muscle cell
2
epithelial cell of proximal tubule
2
erythroid cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of dermis
2
fibroblast of mammary gland
2
fibroblast of peridontal ligament
2
fibroblast of pulmonary artery
2
fibroblast of the conjunctiva
2
fibroblast of villous mesenchyme
2
foreskin melanocyte
2
gabaergic neuron
2
gamma-delta T cell
2
germinal matrix
2
glial cell
2
glutamatergic neuron
2
hematopoietic multipotent progenitor cell
2
hepatic stellate cell
2
iPS DF 4.7 Cell Line
2
iris pigment epithelial cell
Life stage
adult
1
unknown
Date released
1
June, 2020
1
September, 2022
Software used
1
chromhmm
1
macs
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
relevant_life_stage!
adult
Showing 2 of 2 results
table-tab-icon
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Download
FileSet
DSR841XEM
released
Annotation file set
: Chromatin states for BSS00543 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR365ACB
released
Annotation file set
: Accessible chromatin annotation for Blood Hematopoietic Stem Cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP