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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
22
candidate regulatory elements
14
gene expression
14
target gene predictions
12
chromatin state
7
accessible chromatin
5
histone modifications
2
binding sites
2
variant allelic effects
Annotation Category
7
cis-regulatory elements
Annotation type Category
5
ATAC-seq
1
DNase-seq
1
snATAC-seq
Available data
7
bed bed3+
7
bigWig
File set status
7
released
Genome assembly (visualization)
7
GRCh38
7
hg19
Organism
7
Homo sapiens
Biosample type
7
primary cell
Biosample term
22
retina
20
pigmented layer of retina
16
endothelial cell
16
fibroblast
16
monocyte
13
excitatory neuron
12
macrophage
10
neural progenitor cell
10
pericyte cell
9
kidney
9
smooth muscle cell
8
EndoC_BH1
8
astrocyte
8
pancreatic beta cell
8
retinal pigment epithelial cell
7
hepatocyte
7
pancreatic acinar cell
7
pancreatic alpha cell
7
pancreatic ductal cell
6
B cell
6
T cell
6
embryonic stem cell
6
endothelial cell of hepatic sinusoid
6
glutamatergic neuron
6
islet of Langerhans
5
SGBS preadipocytes
5
adipocyte
5
chondrocyte
5
erythroblast
5
inhibitory neuron
5
pancreatic delta cell
5
skeletal muscle fiber
5
skeletal muscle satellite cell
4
CD8-positive, alpha-beta T cell
4
memory B cell
4
pancreatic stellate cell
4
type II pneumocyte
3
cardiac fibroblast
3
colon epithelial cell
3
coronary artery
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
gabaergic neuron
3
heart
3
heart left ventricle
3
liver
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
natural killer cell
3
osteoblast
3
pancreas
3
regulatory T cell
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
Muller cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
adipose tissue
2
adipose-derived stem cell
2
aortic endothelial cell
2
basal cell
2
blood vessel smooth muscle cell
2
capillary endothelial cell
2
cardiac muscle cell
2
central memory CD8-positive, alpha-beta T cell
2
ciliated cell
2
club cell
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
enteric neuron
2
enteric smooth muscle cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of cardiac tissue
2
gamma-delta T cell
2
glial cell
2
glomerular visceral epithelial cell
2
hepatic stellate cell
2
keratinocyte
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mature natural killer cell
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
mesenchymal stem cell
2
mesothelial cell
2
naive regulatory T cell
2
neuron
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
omental fat pad
2
pancreatic polypeptide-secreting cell
2
plasma cell
2
plasmacytoid dendritic cell
2
right atrium auricular region
2
schwann cell
2
smooth muscle cell of the esophagus
2
subcutaneous adipose tissue
2
tibial artery
2
tibial nerve
1
hindlimb muscle
1
Ammon's horn
1
CD4-positive helper T cell
1
CD4-positive, alpha-beta T cell
1
HepG2
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
Schwann cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
alveolar macrophage
1
ascending aorta
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
basal cell of epidermis
1
brain
1
brain microvascular endothelial cell
1
brain pericyte
1
cardiac endothelial cell
1
cardiac precursors
1
caudate nucleus
1
cerebellar cortex
1
cerebellum
1
cholangiocyte
1
choroid plexus epithelial cell
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colon goblet cell
1
conventional dendritic cell
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
eccrine cell
1
endothelial cell of artery
1
endothelial cell of umbilical vein
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
epithelial cell of proximal tubule
1
erythrocyte
1
extravillous trophoblast
1
fetal heart
1
fetal thymocyte
1
forelimb muscle
1
foveolar cell of stomach
1
frontal cortex
1
gastric goblet cell
1
globus pallidus
1
glomerular endothelial cell
1
goblet cell
1
granular cell of epidermis
1
heart right ventricle
1
hepatoblast
1
hippocampal neuron
1
immature natural killer cell
1
intestinal tuft cell
1
kidney capillary endothelial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
kidney tubule cell
1
left cardiac atrium
1
left renal cortex interstitium
1
left renal pelvis
1
lower motor neuron
1
lung neuroendocrine cell
1
luteal cell
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mammary gland epithelial cell
1
mast cell
1
mature NK T cell
1
medulla oblongata
1
melanocyte
1
metanephros
1
microglial cell
1
microglial cell/astrocyte
1
midbrain
1
middle frontal gyrus
1
muscle of arm
1
muscle of leg
1
myeloid dendritic cell
1
myoepithelial cell
1
myofibroblast cell
1
naive t cell
Organ
7
epithelium
7
liver
Life stage
5
adult
Date released
5
February, 2024
June, 2020
1
January, 2020
1
November, 2021
Software used
7
macs
Lab
5
Ines Cebola, Imperial College London
1
AMP-T2D consortium
1
Bing Ren, UCSD
Project
6
AMP
1
ENCODE
RFA
5
AMP2
1
AMP
1
ENCODE3
month_released!
June, 2020
Showing 7 of 7 results
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Download
FileSet
DSR084ACR
released
Annotation file set
: Accessible chromatin annotation of Hepatocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR614AYG
released
Annotation file set
: Accessible chromatin of primary hepatocytes in basal media with 10nM insulin, 320µM palmitic acid and 320µM oleic acid (18 hours). Monolayer culture, day 3.
Lab:
Ines Cebola, Imperial College London
Project:
AMP
FileSet
DSR961YSK
released
Annotation file set
: Accessible chromatin of primary hepatocytes in basal media with 10nM insulin and 320µM oleic acid (18 hours). Monolayer culture, day 3.
Lab:
Ines Cebola, Imperial College London
Project:
AMP
FileSet
DSR909IMA
released
Annotation file set
: Accessible chromatin of primary hepatocytes in basal media with 10nM insulin and 320µM palmitic acid (18 hours). Monolayer culture, day 3.
Lab:
Ines Cebola, Imperial College London
Project:
AMP
FileSet
DSR862SUJ
released
Annotation file set
: Accessible chromatin of primary hepatocytes in basal media with 10nM insulin (18 hours). Monolayer culture, day 3.
Lab:
Ines Cebola, Imperial College London
Project:
AMP
FileSet
DSR683ANQ
released
Annotation file set
: Accessible chromatin of primary hepatocytes in basal media with 0.1nM insulin (18 hours). Monolayer culture, day 3.
Lab:
Ines Cebola, Imperial College London
Project:
AMP
FileSet
DSR934SGC
released
Annotation file set
: Accessible chromatin annotation of liver hepatocyte from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP