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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
chromatin state
1
gene expression
1
histone modifications
1
target gene predictions
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
ChIP-seq
2
DNase-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
in vitro differentiated cells
Biosample term
37
heart
33
muscle of arm
32
brain
30
lung
30
stomach
28
large intestine
28
muscle of back
28
placenta
27
kidney
27
muscle of leg
26
left lung
25
small intestine
22
right lung
21
neural progenitor cell
21
thymus
20
renal cortex interstitium
20
right kidney
19
CD8-positive, alpha-beta T cell
19
renal pelvis
18
left kidney
16
adrenal gland
15
spinal cord
12
foreskin keratinocyte
11
CD4-positive, alpha-beta memory T cell
11
breast cancer cell
10
trophoblast cell
9
foreskin fibroblast
9
gastric cancer cell
8
Rhabdomyosarcoma
8
cardiac muscle cell
8
chorionic villus
8
muscle of trunk
8
neuroblastoma cell
7
H9
7
HepG2
7
common myeloid progenitor, CD34-positive
7
diffuse intrinsic pontine glioma
7
esophageal adenocarcinoma
7
heart left ventricle
7
hepatocyte
7
neurosphere
7
retina
6
B-lymphoblastoid cell line
6
Chondroid Chordoma
6
bronchial epithelial cell
6
endothelial cell of umbilical vein
6
hESC cell
6
keratinocyte
6
left renal cortex interstitium
6
left renal pelvis
6
liposarcoma
6
liver
6
neuroblastoma cell line
6
right renal pelvis
6
squamous cell lung carcinoma
5
22Rv1
5
B cell
5
SK-N-DZ
5
T-cell acute lymphoblastic leukemia
5
T-helper 17 cell
5
WI38
5
endodermal cell
5
epithelial cell of prostate
5
foreskin melanocyte
5
melanoma cell
5
mesodermal cell
5
neuronal stem cell
5
osteosarcoma
5
right renal cortex interstitium
4
HEK293
4
SK-N-SH
4
eye
4
fibroblast of cardiac tissue
4
heart right ventricle
4
mammary epithelial cell
4
neutrophil
4
osteoblast
4
rhabdomyosarcoma cell
4
spleen
4
testis
4
tongue
4
trophoblast
3
CD1c-positive myeloid dendritic cell
3
CD4-positive, alpha-beta T cell
3
CD8-positive, alpha-beta memory T cell
3
CMK
3
Ewing sarcoma
3
GM06990
3
GM12864
3
GM12865
3
IMR-90
3
MG63
3
NAMALWA cell
3
PC-9
3
SK-N-MC
3
WERI-Rb-1
3
acute myeloid leukemia
3
adipocyte
3
astrocyte
3
chorion membrane
3
choroid plexus epithelial cell
3
dermis blood vessel endothelial cell
3
dermis lymphatic vessel endothelial cell
3
diffuse large B-cell lymphoma
3
esophageal squamous cell carcinoma
3
fibroblast of lung
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
glioblastoma cell
3
glioma cell
3
hematopoietic multipotent progenitor cell
3
limb
3
lung microvascular endothelial cell
3
lymphoblast
3
lymphoblastoid cell line
3
mesenchymal stem cell
3
mesendoderm
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
neural cell
3
pancreatic ductal adenocarcinoma
3
pulmonary artery endothelial cell
3
regulatory T cell
3
retinal pigment epithelial cell
3
skeletal muscle myoblast
3
skeletal muscle tissue
3
skin fibroblast
3
umbilical cord
2
A673
2
AG04449 cell
2
AG04450 cell
2
B-lymphocyte
2
BE(2)-C
2
BJ cell
2
CD14-positive monocyte
2
COLO205
2
DND-41
2
Daoy
2
EH
2
EL
2
ELF-1
2
ELR
2
G401
2
GM08714
2
GM12873
2
GM12875
2
GM12891
2
GM12892
2
GM18507
2
H1-hESC
2
H7-hESC
2
HK-2 cell
2
HS-SY-2 cell
2
HUES48
2
HUES6
2
HUES64
2
Jurkat
2
KOPT-K1
2
L1-S8
2
MCF-7
2
Mantle cell lymphoma
2
NAMALWA
2
NT2-D1 cell
2
Panc1
2
RKO
2
RS4-11 cell
2
Rh-4 cell
2
SJCRH30
2
T cell
2
T-cell
2
T-helper 1 cell
2
T-helper 2 cell
2
Th1 cell
2
UCSF-4
2
acute myeloid leukemia cell
2
amnion
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
astrocyte of the spinal cord
2
brain microvascular endothelial cell
2
cardiac fibroblast
2
cardiac myoblast
2
cardiovascular progenitor cell
2
chorion
2
chronic lymphocytic leukemia
2
colon adenocarcinoma
2
colon carcinoma
2
dermis microvascular lymphatic vessel endothelial cell
2
ectodermal cell
2
embryonic stem cell
2
endometriosis
2
epithelial cell of esophagus
2
epithelial cell of proximal tubule
2
epithelial ovarian cancer cell
2
erythroid progenitor cell
2
esophageal carcinoma
2
femur
2
fibroblast
2
fibroblast of dermis
2
fibroblast of gingiva
Life stage
adult
2
unknown
Date released
2
February, 2021
1
September, 2022
Software used
1
encode-ccres
1
macs
1
r
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
relevant_life_stage!
adult
Showing 3 of 3 results
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Download
FileSet
DSR993OAS
released
Annotation file set
: Candidate regulatory elements for BSS00543 hematopoietic multipotent progenitor cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR342QFZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE hematopoietic multipotent progenitor cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR383WGV
released
Annotation file set
: Histone modifications annotation for Blood Hematopoietic_Stem_Cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP