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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
2
chromatin state
2
target gene predictions
1
binding sites
1
histone modifications
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
ChIP-seq
Available data
2
bed bed9
1
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
in vitro differentiated cells
3
cell line
Biosample term
86
monocyte
31
CD8-positive, alpha-beta T cell
22
heart
21
brain
20
stomach
19
A549
18
kidney
16
lung
16
muscle of arm
16
placenta
15
muscle of leg
15
small intestine
14
adrenal gland
14
large intestine
13
common myeloid progenitor, CD34-positive
13
left lung
13
muscle of back
12
thymus
11
breast cancer cell
11
liver
11
right lung
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
gastric cancer cell
9
heart left ventricle
9
left kidney
9
renal cortex interstitium
9
renal pelvis
8
B cell
8
K562
8
Rhabdomyosarcoma
8
mature neutrophil
8
neuroblastoma cell
8
spinal cord
7
CD8-positive, alpha-beta memory T cell
7
HepG2
7
MCF-7
6
B-lymphoblastoid cell line
6
adipose tissue
6
diffuse intrinsic pontine glioma
6
keratinocyte
6
left cardiac atrium
6
liposarcoma
6
mononuclear cell
6
spleen
6
squamous cell lung carcinoma
6
temporal lobe
5
CD14-positive, CD16-negative classical monocyte
5
Chondroid Chordoma
5
T cell
5
caudate nucleus
5
endothelial cell of umbilical vein
5
esophageal adenocarcinoma
5
fibroblast of cardiac tissue
5
hESC cell
5
heart right ventricle
5
hepatocyte
5
layer of hippocampus
5
melanoma cell
5
sigmoid colon
5
trophoblast cell
4
CD14-positive monocyte
4
alternatively activated macrophage
4
angular gyrus
4
aorta
4
body of pancreas
4
bronchial epithelial cell
4
chorionic villus
4
colonic mucosa
4
endocrine pancreas
4
fibroblast of lung
4
foreskin fibroblast
4
foreskin keratinocyte
4
gastrocnemius medialis
4
islet of Langerhans
4
mammary epithelial cell
4
muscle of trunk
4
natural killer cell
4
osteosarcoma
4
ovary
4
pancreas
4
prostate gland
4
psoas muscle
4
regulatory T cell
4
retina
4
skeletal muscle myoblast
4
skeletal muscle tissue
4
substantia nigra
4
testis
4
thyroid gland
4
tibial nerve
4
transverse colon
4
upper lobe of left lung
3
22Rv1
3
CD4-positive, alpha-beta T cell
3
Ewing sarcoma
3
GM12878
3
H1-hESC
3
HeLa-S3
3
KARPAS-422 cell
3
NAMALWA cell
3
Peyer's patch
3
SK-N-DZ
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
acute myeloid leukemia
3
ascending aorta
3
cerebellum
3
chorion membrane
3
cingulate gyrus
3
coronary artery
3
dermis lymphatic vessel endothelial cell
3
duodenal mucosa
3
endometrium adenocarcinoma
3
epithelial cell of prostate
3
esophageal squamous cell carcinoma
3
fibroblast of dermis
3
glioblastoma cell
3
glioma cell
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
inflammatory macrophage
3
lymphoblast
3
lymphoblastoid cell line
3
mammary gland epithelial cell
3
mucosa of rectum
3
naive T cell
3
neurosphere
3
osteoblast
3
right cardiac atrium
3
skin fibroblast
3
stomach smooth muscle
3
thoracic aorta
3
tibial artery
2
AG04449 cell
2
AG04450 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
B-lymphocyte
2
BE(2)-C
2
BJ cell
2
Brodmann (1909) area 46
2
CD1c-positive myeloid dendritic cell
2
CMK
2
COLO205
2
Caco-2 cell
2
ESC derived cell line
2
GM06990
2
GM12864
2
GM12865
2
GM12875
2
GM12891
2
GM12892
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
GM23248
2
H7-hESC
2
HAP-1
2
HEK293
2
HK-2 cell
2
HL-60
2
HS-SY-2 cell
2
HT-29
2
HuH-7
2
IMR-90
2
JVM-2 cell
2
Jurkat
2
LHCN-M2
2
LNCaP clone FGC
2
LoVo cell
2
MG63
2
MM.1S
2
Mantle cell lymphoma
2
NT2-D1 cell
2
OCI-LY1
2
OCI-LY7
2
PC-3
2
PC-9
2
RPMI8226
2
RS4-11 cell
2
RWPE1
2
Rh-4 cell
2
SK-MEL-5
2
SK-N-MC
2
SK-N-SH
2
SW480
2
T47D
2
U-266 cell
2
VCaP cell
2
WERI-Rb-1
2
Z-138
2
acute myeloid leukemia cell
2
astrocyte
2
breast epithelium
2
cardiac muscle cell
2
choroid plexus epithelial cell
Disease term
2
prostate adenocarcinoma
Organ
3
prostate gland
Life stage
2
unknown
Date released
2
September, 2022
1
February, 2021
Software used
2
chromhmm
1
macs
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
biosample_type!
in vitro differentiated cells
Showing 3 of 3 results
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Download
FileSet
DSR591CAE
released
Annotation file set
: Chromatin states for BSS00002 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR529CQS
released
Annotation file set
: Chromatin states for BSS00001 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR228CGU
released
Annotation file set
: Histone modifications annotation for Prostate 22Rv1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP