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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
6
ChIP-seq
4
DNase-seq
1
RNA-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
in vitro differentiated cells
Biosample term
59
heart
51
muscle of arm
48
brain
48
stomach
45
lung
43
muscle of leg
42
large intestine
42
placenta
41
kidney
41
muscle of back
40
small intestine
39
left lung
34
right lung
33
thymus
32
right kidney
31
renal cortex interstitium
31
renal pelvis
27
adrenal gland
27
left kidney
24
spinal cord
18
CD14-positive monocyte
17
CD4-positive, alpha-beta memory T cell
17
trophoblast cell
16
foreskin keratinocyte
13
muscle of trunk
12
chorionic villus
12
endothelial cell of umbilical vein
12
retina
11
common myeloid progenitor, CD34-positive
11
foreskin fibroblast
11
heart left ventricle
10
cardiac muscle cell
10
left renal cortex interstitium
10
left renal pelvis
10
neurosphere
10
pituitary stalk
10
right renal pelvis
9
H9
9
hepatocyte
9
neural progenitor cell
9
right renal cortex interstitium
8
B cell
8
T-helper 17 cell
8
adipocyte
8
epithelial cell of prostate
8
heart right ventricle
8
liver
8
spleen
7
SK-N-DZ
7
SK-N-SH
7
bronchial epithelial cell
7
chorion membrane
7
eye
7
osteoblast
7
skeletal muscle myoblast
7
tongue
7
trophoblast
6
22Rv1
6
WI38
6
choroid plexus epithelial cell
6
dendritic cell
6
endodermal cell
6
fibroblast of cardiac tissue
6
fibroblast of lung
6
foreskin melanocyte
6
glomerular endothelial cell
6
glomerular visceral epithelial cell
6
keratinocyte
6
limb
6
neutrophil
6
renal cortical epithelial cell
6
skin fibroblast
5
CD8-positive, alpha-beta memory T cell
5
HEK293
5
HepG2
5
IMR-90
5
NAMALWA cell
5
PC-9
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
epithelial cell of proximal tubule
5
fibroblast of dermis
5
kidney epithelial cell
5
left cardiac atrium
5
mesenchymal stem cell
5
mesendoderm
5
mesodermal cell
5
ovary
5
psoas muscle
5
regulatory T cell
5
retinal pigment epithelial cell
5
sigmoid colon
5
skeletal muscle cell
5
smooth muscle cell of the brain vasculature
5
testis
4
A673
4
CD1c-positive myeloid dendritic cell
4
CD8-positive, alpha-beta T cell
4
CMK
4
Daoy
4
GM06990
4
GM12864
4
GM12865
4
H1-hESC
4
H7-hESC
4
HUES6
4
L1-S8
4
MG63
4
Panc1
4
SJCRH30
4
SK-N-MC
4
T-cell
4
T-helper 1 cell
4
WERI-Rb-1
4
astrocyte
4
brain microvascular endothelial cell
4
brain pericyte
4
dermis blood vessel endothelial cell
4
dermis lymphatic vessel endothelial cell
4
fibroblast of mammary gland
4
fibroblast of peridontal ligament
4
fibroblast of pulmonary artery
4
fibroblast of the conjunctiva
4
fibroblast of villous mesenchyme
4
hematopoietic multipotent progenitor cell
4
iPS DF 19.11
4
iris pigment epithelial cell
4
kidney capillary endothelial cell
4
lung microvascular endothelial cell
4
neural cell
4
neuronal stem cell
4
non-pigmented ciliary epithelial cell
4
pulmonary artery endothelial cell
4
umbilical cord
3
cardiac fibroblast
3
AG04449 cell
3
AG04450 cell
3
BE(2)-C
3
BJ cell
3
CD4-positive helper T cell
3
CD4-positive, alpha-beta T cell
3
DND-41
3
EH
3
EL
3
ELF-1
3
ELR
3
G401
3
GM03348
3
GM08714
3
GM18507
3
HUES48
3
HUES64
3
Jurkat
3
KOPT-K1
3
L1-S8R
3
NT2-D1 cell
3
T cell
3
T-helper 2 cell
3
U937
3
UCSF-4
3
amnion
3
astrocyte of the spinal cord
3
dermis microvascular lymphatic vessel endothelial cell
3
ectodermal cell
3
embryonic facial prominence
3
epithelial cell of esophagus
3
femur
3
fibroblast of gingiva
3
fibroblast of the aortic adventitia
3
germinal matrix
3
iPS DF 19.7
3
iPS DF 4.7 Cell Line
3
iPS DF 6.9
3
islet precursor cell
3
mammary epithelial cell
3
mammary gland epithelial cell
3
monocyte
3
mononuclear cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
neuron
3
pancreas
3
skeletal muscle tissue
3
smooth muscle cell
3
stromal cell of bone marrow
3
urinary bladder
2
hindlimb muscle
2
muscle of leg
2
A549
2
BJAB cell
2
CWRU1
2
ES-I3
2
GM10248
2
GM10266
2
GM12878
2
GM12891
2
GM12892
2
GM13976
2
GM13977
2
GM20000
2
HAP-1
Life stage
adult
3
unknown
Date released
2
September, 2022
1
February, 2021
1
June, 2020
Software used
2
r
1
encode-ccres
1
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
biosample_term_name!
Ammon's horn
relevant_life_stage!
adult
Showing 4 of 4 results
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Download
FileSet
DSR993OAS
released
Annotation file set
: Candidate regulatory elements for BSS00543 hematopoietic multipotent progenitor cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR231GVC
released
Annotation file set
: Target gene predictions for BSS00543 hematopoietic multipotent progenitor cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR342QFZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE hematopoietic multipotent progenitor cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR365ACB
released
Annotation file set
: Accessible chromatin annotation for Blood Hematopoietic Stem Cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP