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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
ChIP-seq
47
DNase-seq
Available data
4
bed bed3+
2
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
52
HeLa-S3
47
H1-hESC
38
monocyte
33
endothelial cell
26
fibroblast
26
islet of Langerhans
25
hepatocyte
25
retina
22
macrophage
21
EndoC_BH1
21
pancreatic ductal cell
20
pigmented layer of retina
20
smooth muscle cell
19
HFFc6
19
pericyte cell
18
K562
18
neural progenitor cell
18
pancreatic beta cell
17
epithelial cell of proximal tubule
17
induced pluripotent stem cell
17
pancreatic acinar cell
17
pancreatic alpha cell
16
glomerular endothelial cell
16
pancreatic delta cell
15
CD14-positive monocyte
14
excitatory neuron
13
adipocyte
13
regulatory T cell
12
B cell
12
CD8-positive, alpha-beta T cell
12
astrocyte
12
subcutaneous adipose tissue
11
cardiomyocytes
11
coronary artery
11
heart
10
T-helper 1 cell
10
endothelial cell of hepatic sinusoid
10
liver
10
pancreatic stellate cell
10
pituitary stalk
10
right atrium auricular region
10
tibial nerve
9
T cell
9
extended pluripotent stem (EPS) cells
9
memory B cell
9
pancreas
9
progenitor cell of endocrine pancreas
9
retinal pigment epithelial cell
9
skeletal muscle fiber
9
tibial artery
8
GM12878
8
T-helper 17 cell
8
adipose tissue
8
cardiomyocytes (cardiac muscle cell)
8
embryonic stem cell
8
frontal cortex
8
glomerular visceral epithelial cell
8
glutamatergic neuron
8
heart left ventricle
8
naive thymus-derived CD8-positive, alpha-beta T cell
8
osteoblast
8
skeletal muscle satellite cell
7
Ammon's horn
7
H9
7
body of pancreas
7
caudate nucleus
7
erythroblast
7
kidney loop of Henle thin ascending limb epithelial cell
7
mesangial cell
7
mesenchymal stem cell
7
natural killer cell
7
omental fat pad
7
putamen
7
type II pneumocyte
6
CD4-positive helper T cell
6
SGBS preadipocytes
6
ascending aorta
6
cardiac precursors (cardiac muscle cell)
6
cerebellum
6
colon epithelial cell
6
cortical cell of adrenal gland
6
dendritic cell
6
enterocyte
6
gamma-delta T cell
6
keratinocyte
6
kidney interstitial cell
6
lymphocyte
6
naive B cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
6
stomach
6
type I muscle cell
6
type II muscle cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
HUES8
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T-helper 2 cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
adrenal gland
5
basal cell
5
cardiac muscle cell
5
central memory CD8-positive, alpha-beta T cell
5
cerebellum (Hemisphere)
5
chondrocyte
5
effector memory CD8-positive, alpha-beta T cell
5
endothelial cell of umbilical vein
5
fibroblast of cardiac tissue
5
gabaergic neuron
5
heart right ventricle
5
hepatic stellate cell
5
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
pancreatic endothelial cell
5
psoas muscle
5
skeletal muscle myoblast
5
smooth muscle cell of the coronary artery
5
spleen
4
C1 segment of cervical spinal cord
4
CD4-positive, alpha-beta T cell
4
CyT49
4
HepG2
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
Schwann cell
4
T follicular helper cell
4
adult endothelial progenitor cell
4
amygdala
4
anterior cingulate cortex
4
blood vessel smooth muscle cell
4
bone tissue
4
brain
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
gastrocnemius medialis(Muscle - Skeletal)
4
hypothalamus
4
iPSC derived cell line
4
kidney
4
kidney glomerular epithelial cell
4
left ventricle myocardium
4
leukocyte
4
luminal epithelial cell of mammary gland
4
mammary gland epithelial cell
4
mast cell
4
mature natural killer cell
Organ
4
kidney
Life stage
3
fetal
Date released
2
January, 2020
1
June, 2020
1
May, 2020
Software used
3
macs
1
deltasvm
Lab
Katalin Susztak, Upenn
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type!
eQTL
lab.title!
Katalin Susztak, Upenn
annotation_type_category!
ChIP-seq
Showing 4 of 4 results
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Download
FileSet
DSR920NWL
released
Annotation file set
: Accessible chromatin annotation for Kidney Fetal kidney from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR821RRV
released
Annotation file set
: Genetic variants with deltaSVM predictions in kidney fetal DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR151NNQ
released
Annotation file set
: Accessible chromatin annotation of left kidney from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR166VPA
released
Annotation file set
: Accessible chromatin annotation of kidney fetal from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP