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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
16
chromatin state
7
accessible chromatin
7
gene expression
2
histone modifications
1
binding sites
1
eQTL
Annotation Category
7
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
7
ATAC-seq
DNase-seq
1
RNA-seq
Available data
8
bed bed3+
7
bigWig
File set status
8
released
Genome assembly (visualization)
8
hg19
7
GRCh38
Organism
8
Homo sapiens
Biosample type
8
tissue
Biosample term
22
retina
20
monocyte
20
pigmented layer of retina
19
islet of Langerhans
19
macrophage
18
fibroblast
17
endothelial cell
13
excitatory neuron
10
liver
10
neural progenitor cell
10
pericyte cell
10
smooth muscle cell
8
EndoC_BH1
8
T cell
8
astrocyte
8
kidney
8
pancreatic beta cell
8
subcutaneous adipose tissue
7
pancreatic acinar cell
7
pancreatic alpha cell
7
pancreatic ductal cell
7
retinal pigment epithelial cell
6
B cell
6
adipose tissue
6
embryonic stem cell
6
endothelial cell of hepatic sinusoid
6
glutamatergic neuron
6
hepatocyte
6
lymphoblastoid cell line
5
SGBS preadipocytes
5
adipocyte
5
chondrocyte
5
erythroblast
5
inhibitory neuron
5
pancreatic delta cell
5
regulatory T cell
5
skeletal muscle fiber
5
skeletal muscle satellite cell
4
CD8-positive, alpha-beta T cell
4
coronary artery
4
memory B cell
4
naive thymus-derived CD8-positive, alpha-beta T cell
4
natural killer cell
4
pancreatic stellate cell
4
type I muscle cell
4
type II muscle cell
4
type II pneumocyte
3
T follicular helper cell
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
blood cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
gabaergic neuron
3
mesenchymal stem cell
3
naive B cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
omental fat pad
3
putamen
3
right atrium auricular region
3
skin of body
3
substantia nigra
3
tibial artery
3
tibial nerve
3
type I pneumocyte
2
Muller cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
adipose-derived stem cell
2
amygdala
2
anterior cingulate cortex
2
aortic endothelial cell
2
articular chondrocyte
2
basal cell
2
blood
2
blood vessel smooth muscle cell
2
brain
2
capillary endothelial cell
2
cartilage tissue
2
caudate nucleus
2
central memory CD8-positive, alpha-beta T cell
2
cerebellum
2
ciliated cell
2
club cell
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
enteric neuron
2
enteric smooth muscle cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of cardiac tissue
2
frontal cortex
2
gamma-delta T cell
2
glial cell
2
heart left ventricle
2
hypothalamus
2
iPSC derived cell line
2
keratinocyte
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mature natural killer cell
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
mesothelial cell
2
microglial cell
2
muscle
2
naive regulatory T cell
2
neuron
2
neutrophil
2
nucleus accumbens
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
osteoblast
2
pancreas
2
pancreatic polypeptide-secreting cell
2
plasma cell
2
plasmacytoid dendritic cell
2
schwann cell
2
skeletal muscle tissue
2
smooth muscle cell of the esophagus
2
spleen
1
Ammon's horn
1
C1 segment of cervical spinal cord
1
CD4-positive helper T cell
1
CD4-positive, alpha-beta T cell
1
HepG2
1
Leydig cell
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
Schwann cell
1
abdominal aorta artery
1
adrenal gland
1
alveolar macrophage
1
ascending aorta
1
basal cell of epidermis
1
body of pancreas
1
breast
1
cardiac endothelial cell
1
cardiac muscle cell
1
cardiac precursors
1
cerebellar hemisphere
1
cerebellum (Hemisphere)
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
colon goblet cell
1
colon sigmoid
1
conventional dendritic cell
1
cortex
1
cortex of kidney
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
dorsolateral prefrontal cortex
1
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
1
eccrine cell
1
endothelial cell of artery
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
erythrocyte
1
esophagus
1
esophagus mucosa
1
esophagus muscularis mucosa
1
extravillous trophoblast
1
fat cell
1
fetal thymocyte
1
foveolar cell of stomach
1
gastric goblet cell
1
gastrocnemius medialis(Muscle - Skeletal)
1
glomerular visceral epithelial cell
1
goblet cell
1
granular cell of epidermis
1
heart
1
helper T cell
1
hepatic stellate cell
1
hepatoblast
1
hippocampal neuron
1
immature natural killer cell
1
intestinal tuft cell
1
kidney distal convoluted tubule epithelial cell
1
kidney glomerular epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
layer of hippocampus
1
left ventricle myocardium
1
lower motor neuron
1
lung
Disease term
2
diabetes mellitus,hypertensive disorder
1
chronic kidney disease
1
hypertensive disorder
1
hypertensive disorder, chronic kidney disease
Organ
8
kidney
Date released
8
August, 2021
Software used
7
macs
1
matrix-eQTL
Lab
8
Katalin Susztak, Upenn
Project
8
AMP
RFA
8
AMP2
annotation_type_category!
DNase-seq
biosample_term_name!
colon goblet cell
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR049INR
released
Annotation file set
: eQTL of kidney from Katalin Susztak Lab based on 121 kidney samples
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR016ZOX
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR073KQB
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq for hypertension group
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR880LWO
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq for diabetes mellitus/Hypertension group
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR772HPX
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq for diabetic kidney disease/Hypertension group
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR307LRO
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq for control group
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR574ZEL
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq for chronic kidney disease/hypertension group
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR937TUB
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq for chronic kidney disease group
Lab:
Katalin Susztak, Upenn
Project:
AMP