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Schema
Citing CMDGA
Clear Filters
Annotation type
58
candidate regulatory elements
34
chromatin state
30
target gene predictions
8
gene expression
5
accessible chromatin
5
histone modifications
3
eQTL
2
binding sites
2
variant allelic effects
Annotation Category
5
cis-regulatory elements
3
Genetic variant effects
Annotation type Category
ATAC-seq
5
DNase-seq
3
RNA-seq
Available data
6
bed bed3+
3
bigWig
File set status
8
released
Genome assembly (visualization)
6
hg19
5
GRCh38
Organism
8
Homo sapiens
Biosample type
8
tissue
Biosample term
20
macrophage
18
fibroblast
16
endothelial cell
15
islet of Langerhans
12
excitatory neuron
10
pericyte cell
10
smooth muscle cell
9
T cell
8
liver
7
astrocyte
7
lymphoblastoid cell line
7
monocyte
7
pancreatic ductal cell
6
B cell
6
pancreatic acinar cell
6
pancreatic alpha cell
6
pancreatic beta cell
6
subcutaneous adipose tissue
5
erythroblast
5
inhibitory neuron
5
pancreas
5
pancreatic delta cell
5
putamen
5
regulatory T cell
5
skeletal muscle fiber
5
skeletal muscle satellite cell
4
adipose tissue
4
brain
4
caudate nucleus
4
fibroblast of cardiac tissue
4
frontal cortex
4
heart
4
kidney
4
mesenchymal stem cell
4
natural killer cell
4
pancreatic stellate cell
4
right atrium auricular region
4
stomach
4
tibial artery
4
tibial nerve
4
type I muscle cell
4
type II muscle cell
4
type II pneumocyte
3
cardiac fibroblast
3
Ammon's horn
3
CD8-positive, alpha-beta T cell
3
adipocyte
3
blood cell
3
cerebellum
3
colon epithelial cell
3
coronary artery
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
heart left ventricle
3
hepatic stellate cell
3
hepatocyte
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
omental fat pad
3
osteoblast
3
retina
3
retinal pigment epithelial cell
3
skin fibroblast
3
skin of body
3
spinal cord
3
substantia nigra
3
type I pneumocyte
2
Muller cell
2
Rh-4 cell
2
T-helper 1 cell
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
acute myeloid leukemia cell
2
adrenal gland
2
amygdala
2
anterior cingulate cortex
2
articular chondrocyte
2
ascending aorta
2
basal cell
2
blood
2
blood vessel smooth muscle cell
2
bone marrow cell
2
brain pericyte
2
capillary endothelial cell
2
cartilage tissue
2
choroid plexus epithelial cell
2
ciliated cell
2
club cell
2
cortex of kidney
2
endocardial cell
2
endothelial cell of hepatic sinusoid
2
endothelial cell of umbilical vein
2
enteric neuron
2
enteric smooth muscle cell
2
erythroid cell
2
esophagus muscularis mucosa
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
gabaergic neuron
2
glial cell
2
globus pallidus
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
glutamatergic neuron
2
hypothalamus
2
iPSC derived cell line
2
keratinocyte
2
kidney tubule cell
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mammary gland epithelial cell
2
medulla oblongata
2
megakaryocyte
2
memory B cell
2
mesangial cell
2
mesothelial cell
2
microglial cell
2
midbrain
2
muscle
2
muscle of leg
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
neutrophil
2
nucleus accumbens
2
occipital lobe
2
oligodendrocyte precursor cell
2
ovary
2
pancreatic polypeptide-secreting cell
2
placenta
2
pons
2
prostate gland
2
renal cortical epithelial cell
2
renal pelvis
2
schwann cell
2
skeletal muscle myoblast
2
skeletal muscle tissue
2
small intestine
2
smooth muscle cell of the esophagus
2
spleen
2
superior temporal gyrus
2
testis
2
thyroid gland
2
transverse colon
2
uterus
1
hindlimb muscle
1
786-O cell
1
A-673 cell
1
A172
1
A549
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
B-Lymphocytes
1
B-lymphocyte
1
BE(2)-C
1
BJ cell
1
C1 segment of cervical spinal cord
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive helper T cell
1
CD4-positive, alpha-beta T cell
1
CMK
1
COLO-829 cell
1
COLO205
1
Caco-2 cell
1
Caki2
1
D341 Med cell
1
DG-75 cell
1
Daoy
1
ECC-1
1
G-401 cell
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM12878
1
GM13976
1
GM13977
1
GM18507
1
GM19240
1
GM20000
1
GM23248
1
GP5d
1
Glioblastoma
1
H1-hESC
1
H4
1
H7-hESC
1
HAC cell
1
HAP-1
1
HBMEC cell
1
HCT-116 cell
1
HEK293
1
HGF
Organ
4
brain
4
kidney
Life stage
3
fetal
Date released
3
January, 2020
2
January, 2022
2
June, 2020
1
August, 2021
Software used
5
macs
2
qTLtools
1
matrix-eQTL
Lab
7
AMP-T2D consortium
1
Katalin Susztak, Upenn
Project
8
AMP
RFA
7
AMP
1
AMP2
annotation_type_category!
ATAC-seq
Showing 8 of 8 results
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Download
FileSet
DSR191XXQ
released
Annotation file set
: brain naive eQTL of studay ROSMAP from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR999BSN
released
Annotation file set
: brain eQTL of studay BrainSeq from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR049INR
released
Annotation file set
: eQTL of kidney from Katalin Susztak Lab based on 121 kidney samples
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR147QJJ
released
Annotation file set
: Accessible chromatin annotation for Neural Fetal brain from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR920NWL
released
Annotation file set
: Accessible chromatin annotation for Kidney Fetal kidney from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR151NNQ
released
Annotation file set
: Accessible chromatin annotation of left kidney from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR166VPA
released
Annotation file set
: Accessible chromatin annotation of kidney fetal from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR271FEH
released
Annotation file set
: Accessible chromatin annotation of brain fetal from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP