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Schema
Citing CMDGA
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Annotation type
31
candidate regulatory elements
17
target gene predictions
12
accessible chromatin
7
histone modifications
4
binding sites
1
chromatin state
1
eQTL
1
variant allelic effects
Annotation Category
1
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
1
ChIP-seq
1
RNA-seq
Available data
17
bed bed9
2
bed bed3+
2
bigBed bed9
1
bigWig
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
1
cell line
1
tissue
Biosample term
5
left cardiac atrium
4
adipocyte
4
islet of Langerhans
2
ESC derived cell line
2
subcutaneous adipose tissue
1
CD34-PB
1
GM12878
1
H1-hESC
1
HepG2
1
K562
1
adipose tissue
1
caudate nucleus
1
cingulate gyrus
1
colonic mucosa
1
duodenal mucosa
1
endothelial cell
1
endothelial cell of umbilical vein
1
fibroblast of lung
1
keratinocyte
1
kidney
1
layer of hippocampus
1
liver
1
mammary epithelial cell
1
mesenchymal stem cell
1
mid-frontal lobe
1
mucosa of rectum
1
nephron tubule
1
pancreas
1
rectum smooth muscle tissue
1
skeletal muscle
1
skeletal muscle myoblast
1
smooth muscle cell
1
stomach smooth muscle
1
subcutaneous abdominal adipose tissue
1
substantia nigra
1
temporal lobe
1
type I muscle cell
1
type II muscle cell
Organ
1
kidney
1
liver
Date released
1
August, 2017
1
August, 2021
Software used
1
chromhmm
1
matrix-eQTL
Lab
1
Katalin Susztak, Upenn
1
Stephen Parker, UMich
Project
2
AMP
RFA
1
AMP
1
AMP2
Showing 2 of 2 results
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Download
FileSet
DSR049INR
released
Annotation file set
: eQTL of kidney from Katalin Susztak Lab based on 121 kidney samples
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
TSTSR035696
released
Annotation file set
: ChromHMM 13-state model for Hepatocellular Carcinoma Cell Line
Lab:
Stephen Parker, UMich
Project:
AMP