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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
3
chromatin state
2
target gene predictions
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
ChIP-seq
Available data
3
bed bed9
1
bigBed bed9
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
GRCh38
3
hg19
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
18
A549
10
common myeloid progenitor, CD34-positive
9
hematopoietic multipotent progenitor cell
6
B cell
6
K562
6
adipose tissue
6
adrenal gland
5
CD8-positive, alpha-beta memory T cell
5
MCF-7
5
liver
5
mature neutrophil
5
mononuclear cell
5
stomach
4
angular gyrus
4
aorta
4
body of pancreas
4
gastrocnemius medialis
4
sigmoid colon
4
spleen
4
temporal lobe
4
thyroid gland
4
tibial nerve
4
transverse colon
3
CD14-positive monocyte
3
CD4-positive, alpha-beta T cell
3
CD4-positive, alpha-beta memory T cell
3
HeLa-S3
3
Peyer's patch
3
T cell
3
ascending aorta
3
caudate nucleus
3
coronary artery
3
endocrine pancreas
3
endometrium adenocarcinoma
3
heart left ventricle
3
immortal human breast epithelial cell line cell
3
inflammatory macrophage
3
kidney
3
layer of hippocampus
3
natural killer cell
3
ovary
3
psoas muscle
3
right cardiac atrium
3
thoracic aorta
3
tibial artery
3
upper lobe of left lung
2
Brodmann (1909) area 46
2
CD14-positive, CD16-negative classical monocyte
2
GM12878
2
LNCaP clone FGC
2
T-helper 1 cell
2
T-helper 2 cell
2
T47D
2
alternatively activated macrophage
2
breast epithelium
2
cerebellum
2
cingulate gyrus
2
colonic mucosa
2
duodenal mucosa
2
esophagus
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
fibroblast of breast
2
frontal cortex
2
kidney tubule cell
2
lower leg skin
2
mammary gland epithelial cell
2
mesenchymal stem cell
2
mucosa of rectum
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
naive T cell
2
omental fat pad
2
pancreas
2
parathyroid adenoma
2
prostate gland
2
regulatory T cell
2
right atrium auricular region
2
skeletal muscle satellite cell
2
skeletal muscle tissue
2
small intestine
2
stomach smooth muscle
2
substantia nigra
2
testis
2
vagina
1
8988T
1
A172
1
ACC112
1
ACHN
1
AG08395 cell
1
AG08396 cell
1
AG09309 cell
AG09319 cell
AG10803 cell
1
AG20443
1
Ammon's horn
1
C4-2B
1
COLO829
1
Caco-2 cell
1
Caki2
1
DOHH2
1
GM04503
1
GM04504
1
GM10248
1
GM10266
1
GM12875
1
GM19238
1
GM19239
1
GM19240
1
GM23248
1
GM23338
1
H4
1
H54
1
HAP-1
1
HCT116
1
HL-60
1
HPDE6-E6E7
1
HS-27A
1
HS-5
1
HT-29
1
HT1080
1
HuH-7
1
HuH-7.5
1
KARPAS-422 cell
1
KBM-7
1
KMS-11
1
LHCN-M2
1
LoVo cell
1
Loucy
1
M059J
1
MM.1S
1
NB4
1
NCI-H226 cell
1
NCI-H929
1
OCI-LY1
1
OCI-LY3
1
OCI-LY7
1
PC-3
1
RCC 7860
1
RPMI7951
1
RPMI8226
1
RWPE1
1
RWPE2
1
SJSA1
1
SK-MEL-5
1
SU-DHL-6
1
SW480
1
VCaP cell
1
adipocyte
1
bipolar neuron
1
cerebellar cortex
1
dermis blood vessel endothelial cell
1
fibroblast of cardiac tissue
1
fibroblast of dermis
1
fibroblast of lung
1
gastroesophageal sphincter
1
globus pallidus
1
heart
1
heart right ventricle
1
hepatic stellate cell
1
iPS-11a
1
iPS-15b
1
iPS-18a
1
iPS-18c
1
iPS-20b
1
iPS-NIHi11
1
iPS-NIHi7
1
inferior parietal cortex
1
kidney glomerular epithelial cell
1
luminal epithelial cell of mammary gland
1
lung
1
mammary stem cell
1
mature eosinophil
1
medulla oblongata
1
midbrain
1
middle frontal gyrus
1
mucosa of stomach
1
occipital lobe
1
olfactory neurosphere cell line
1
pons
1
putamen
1
rectum smooth muscle tissue
1
renal cell carcinoma
1
right lobe of liver
1
skeletal muscle myoblast
1
superior temporal gyrus
1
urinary bladder
1
uterus
Organ
3
kidney
Life stage
13
embryonic
3
adult
Date released
2
September, 2022
1
May, 2019
Software used
3
chromhmm
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
biosample_term_name!
AG09319 cell
AG10803 cell
Showing 3 of 3 results
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Download
FileSet
DSR205PVO
released
Annotation file set
: Chromatin states for BSS01097 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR181LMN
released
Annotation file set
: Chromatin states for BSS01096 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR394RHU
released
Annotation file set
: ChromHMM 12-state model for adult kidney from ENCODE ChIP-seq data
Lab:
AMP-T2D consortium
Project:
AMP