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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
30
candidate regulatory elements
17
chromatin state
15
target gene predictions
12
accessible chromatin
7
gene expression
2
histone modifications
2
variant allelic effects
1
binding sites
1
eQTL
Annotation Category
3
Genetic variant effects
Annotation type Category
2
DNase-seq
1
RNA-seq
Available data
2
bed bed3+
File set status
3
released
Genome assembly (visualization)
2
hg19
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
14
islet of Langerhans
10
macrophage
8
fibroblast
7
liver
7
subcutaneous adipose tissue
6
lymphoblastoid cell line
5
adipose tissue
4
T cell
4
coronary artery
4
monocyte
4
putamen
4
right atrium auricular region
4
tibial artery
4
tibial nerve
3
blood cell
3
brain
3
caudate nucleus
3
endothelial cell
3
enterocyte
3
frontal cortex
3
heart left ventricle
3
myofibroblast cell
3
skin of body
3
smooth muscle cell
3
substantia nigra
2
cardiac fibroblast
2
muscle of leg
2
MIN6
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Schwann cell
2
amygdala
2
anterior cingulate cortex
2
articular chondrocyte
2
ascending aorta
2
basal cell
2
blood
2
body of pancreas
2
cardiac muscle cell
2
cartilage tissue
2
cerebellum
2
cerebellum (Hemisphere)
2
epithelial cell of esophagus
2
goblet cell
2
heart
2
hepatocyte
2
hypothalamus
2
iPSC derived cell line
2
kidney
2
muscle
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
neutrophil
2
nucleus accumbens
2
omental fat pad
2
pancreas
2
regulatory T cell
2
retina
2
skeletal muscle fiber
2
skeletal muscle tissue
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
Adipose SGBS cell line (adipocyte)
1
Ammon's horn
1
C1 segment of cervical spinal cord
1
EndoC_BH1
1
Heart fetal (cardiac muscle cell)
1
Leydig cell
1
Liver fetal (hepatocyte)
1
Preadipose SGBS cell line (adipocyte)
1
Satellite Cells, Skeletal Muscle
1
T follicular helper cell
1
T-helper 1 cell
1
T-helper 17 cell
1
T-helper 2 cell
1
abdominal aorta artery
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
adipocyte
1
adrenal gland
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain pericyte
1
breast
1
bronchial goblet cell
1
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
cerebellar hemisphere
1
choroid plexus epithelial cell
1
colon sigmoid
1
cortex
1
cortex of kidney
1
cortical cell of adrenal gland
1
dorsolateral prefrontal cortex
1
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
1
endothelial cell of umbilical vein
1
epithelial cell of proximal tubule
1
esophagus
1
esophagus mucosa
1
esophagus muscularis mucosa
1
fat cell
1
gastrocnemius medialis(Muscle - Skeletal)
1
globus pallidus
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
granulosa cell
1
heart right ventricle
1
helper T cell
1
hepatic stellate cell
1
keratinocyte
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
layer of hippocampus
1
left cardiac atrium
1
left renal cortex interstitium
1
left renal pelvis
1
left ventricle myocardium
1
luminal epithelial cell of prostatic duct
1
lung
1
lymphocyte of B lineage
1
mammary gland epithelial cell
1
mast cell
1
medulla oblongata
1
mesenchymal stem cell
1
mesothelial cell
1
microglial cell
1
midbrain
1
middle frontal gyrus
1
minor salivary gland
1
muscle of arm
1
naive B cel
1
naive t cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
natural killer cell
1
nephron tubule
1
occipital lobe
1
ovary
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
pancreatic delta cell
1
pancreatic ductal cell
1
pancreatic endocrine cell
1
pancreatic polypeptide-secreting cell
1
parietal cell
1
peptic cell
1
pituitary gland
1
placenta
1
pons
1
progenitor cell
1
prostate gland
1
purified protein and synthetic DNA oligo binding assay
1
renal cortex interstitium
1
renal cortical epithelial cell
1
renal glomerulus
1
renal pelvis
1
right kidney
1
right lobe of liver
1
right renal cortex interstitium
1
right renal pelvis
1
sensory neuron
1
skeletal muscle cell
1
skeletal muscle myoblast
1
small intestine
1
smooth muscle cell of the brain vasculature
1
spinal cord
1
spleen
1
stomach
1
superior temporal gyrus
1
synovial joint
1
testis
1
thoracic aorta
1
thyroid follicular cell
1
thyroid gland
transverse colon
1
type I muscle cell
1
type II muscle cell
1
type II pneumocyte
1
uterus
1
vagina
1
visceral abdominal adipose tissue
Organ
2
kidney
1
brain
Life stage
1
adult
1
fetal
Date released
2
May, 2020
1
August, 2021
Software used
2
deltasvm
1
matrix-eQTL
Lab
2
AMP-T2D consortium
1
Katalin Susztak, Upenn
Project
3
AMP
RFA
2
AMP
1
AMP2
biosample_term_name!
transverse colon
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR049INR
released
Annotation file set
: eQTL of kidney from Katalin Susztak Lab based on 121 kidney samples
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR982FHO
released
Annotation file set
: Variant allelic effects of pons ENCODE DHSseq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR821RRV
released
Annotation file set
: Genetic variants with deltaSVM predictions in kidney fetal DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP