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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
Annotation Category
2
Target gene links
2
cis-regulatory elements
Annotation type Category
4
DNase-seq
3
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
4
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
tissue
4
cell line
Biosample term
110
monocyte
61
HeLa-S3
47
CD8-positive, alpha-beta T cell
45
H1-hESC
44
A549
41
common myeloid progenitor, CD34-positive
39
neural progenitor cell
35
K562
34
B cell
32
hematopoietic multipotent progenitor cell
30
endothelial cell
30
fibroblast
27
CD14-positive monocyte
23
CD4-positive, alpha-beta memory T cell
23
macrophage
22
adipocyte
22
hepatocyte
22
smooth muscle cell
21
MCF-7
21
pericyte cell
20
breast cancer cell
19
HFFc6
19
keratinocyte
18
foreskin keratinocyte
17
T cell
17
foreskin fibroblast
17
trophoblast cell
16
HepG2
16
cardiac muscle cell
16
natural killer cell
16
regulatory T cell
15
CD8-positive, alpha-beta memory T cell
15
GM12878
15
H9
15
retinal pigment epithelial cell
14
astrocyte
14
endothelial cell of umbilical vein
14
mesenchymal stem cell
14
mononuclear cell
13
fibroblast of cardiac tissue
13
osteoblast
12
CD4-positive, alpha-beta T cell
12
EndoC_BH1
12
excitatory neuron
12
fibroblast of lung
12
mammary epithelial cell
12
neuroblastoma cell
12
pancreatic beta cell
11
T-helper 1 cell
11
endothelial cell of hepatic sinusoid
11
mammary gland epithelial cell
11
pancreatic ductal cell
11
skeletal muscle myoblast
10
Rhabdomyosarcoma
10
bronchial epithelial cell
10
embryonic stem cell
10
gastric cancer cell
10
neuronal stem cell
10
pancreatic alpha cell
9
T-helper 2 cell
9
diffuse intrinsic pontine glioma
9
epithelial cell of prostate
9
erythroblast
9
fibroblast of dermis
9
liposarcoma
9
lymphocyte
9
neurosphere
9
pancreatic acinar cell
9
pancreatic delta cell
9
skeletal muscle satellite cell
9
skin fibroblast
8
22Rv1
8
B-lymphoblastoid cell line
8
HEK293
8
IMR-90
8
choroid plexus epithelial cell
8
fibroblast cell line
8
pituitary stalk
7
CD4-positive helper T cell
7
GM06990
7
GM12864
7
GM12865
7
GM19240
7
HAP-1
7
HL-60
7
HT-29
7
Jurkat
7
MM.1S
7
NAMALWA cell
7
OCI-LY7
7
PC-9
7
SK-N-MC
7
SK-N-SH
7
T-helper 17 cell
7
esophageal adenocarcinoma
7
kidney tubule cell
7
mesendoderm
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
neutrophil
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM12875
6
GM19238
6
GM19239
6
GM23248
6
HUES8
6
KARPAS-422 cell
6
LHCN-M2
6
LNCAP
6
LoVo cell
6
MG63
6
NT2-D1 cell
6
PC-3
6
RWPE1
6
Rh-4 cell
6
SGBS preadipocytes
6
SK-N-DZ
6
chondrocyte
6
colon epithelial cell
6
endometrium adenocarcinoma
6
fibroblast of pulmonary artery
6
hESC cell
6
immortal human breast epithelial cell line cell
6
neuroblastoma cell line
5
cardiac fibroblast
5
CyT49
5
Daoy
5
Ewing sarcoma
5
GM08714
5
GM10248
5
GM10266
5
GM12891
5
GM12892
5
GM18507
5
H7-hESC
5
HCT-116 cell
5
HCT116
5
HUES6
5
HuH-7
5
KBM-7
5
LNCaP clone FGC
5
OCI-LY1
5
RPMI8226
5
SJSA1
5
SW480
5
WERI-Rb-1
5
WI38
5
acute myeloid leukemia
5
dermis blood vessel endothelial cell
5
endodermal cell
5
enterocyte
5
foreskin melanocyte
5
glomerular visceral epithelial cell
5
glutamatergic neuron
5
hepatic stellate cell
5
lymphoblastoid cell line
5
myoepithelial cell of mammary gland
5
osteosarcoma
5
prostate cancer cell line
5
skeletal muscle fiber
5
smooth muscle cell of the coronary artery
5
type I muscle cell
4
A172
4
A673
4
ACHN
4
B-lymphocyte
4
COLO205
4
Caki2
4
GM04503
4
GM04504
4
GM12873
4
GM18505
4
GM19099
4
GM19193
4
H4
4
HAC cell
4
HBMEC cell
4
HK-2 cell
4
HS-SY-2 cell
4
HUES64
4
Ishikawa
4
L1-S8
4
M059J
4
MDA-MB-231 cell
4
Mantle cell lymphoma
4
NB4
4
NCCIT cell
4
NHEK
4
Normal Human Astrocytes
4
OCI-LY3
4
PANC-1 cell
Disease term
2
Ewing sarcoma
Organ
4
musculature of body
Life stage
2
child
1
young adult
Date released
2
September, 2022
1
February, 2021
1
May, 2021
Software used
2
r
1
abc
1
encode-ccres
Lab
3
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
4
AMP
RFA
4
AMP
biosample_type!
tissue
Showing 4 of 4 results
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Download
FileSet
DSR538XCP
released
Annotation file set
: Candidate regulatory elements for BSS00035 A673 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR887BDZ
released
Annotation file set
: Target gene predictions for BSS00035 A673 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR958EYW
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE A673
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR293FCZ
released
Annotation file set
: enhancer-gene predicton of A673-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP