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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
5
ChIP-seq
4
DNase-seq
Available data
4
bed bed3+
1
bed bed9
tsv
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
89
monocyte
57
A549
40
common myeloid progenitor, CD34-positive
35
hematopoietic multipotent progenitor cell
24
adrenal gland
24
liver
23
B cell
21
adipose tissue
21
retina
21
stomach
20
pigmented layer of retina
19
K562
19
MCF-7
19
spleen
18
CD8-positive, alpha-beta T cell
16
body of pancreas
16
gastrocnemius medialis
16
sigmoid colon
16
thyroid gland
16
transverse colon
15
CD8-positive, alpha-beta memory T cell
15
mononuclear cell
15
tibial nerve
14
heart left ventricle
14
islet of Langerhans
14
pancreas
13
Peyer's patch
13
caudate nucleus
13
upper lobe of left lung
12
CD14-positive monocyte
12
endocrine pancreas
12
layer of hippocampus
12
natural killer cell
12
omental fat pad
12
ovary
12
psoas muscle
11
HeLa-S3
11
aorta
11
temporal lobe
10
T cell
10
angular gyrus
10
ascending aorta
10
endothelial cell of hepatic sinusoid
10
esophagus squamous epithelium
10
lower leg skin
9
CD4-positive, alpha-beta memory T cell
9
breast epithelium
9
coronary artery
9
endometrium adenocarcinoma
9
esophagus muscularis mucosa
9
hepatocyte
9
immortal human breast epithelial cell line cell
9
kidney
9
kidney tubule cell
9
parathyroid adenoma
9
skeletal muscle tissue
9
substantia nigra
9
thoracic aorta
9
tibial artery
8
CD4-positive, alpha-beta T cell
8
T-helper 1 cell
8
cerebellum
8
cingulate gyrus
8
colonic mucosa
8
duodenal mucosa
8
esophagus
8
fibroblast of breast
8
mucosa of rectum
8
muscle layer of colon
8
muscle layer of duodenum
8
myoepithelial cell of mammary gland
8
prostate gland
8
right atrium auricular region
8
small intestine
8
stomach smooth muscle
8
testis
8
vagina
7
LNCaP clone FGC
7
T-helper 2 cell
7
T47D
7
frontal cortex
7
gastroesophageal sphincter
7
kidney glomerular epithelial cell
7
regulatory T cell
7
subcutaneous adipose tissue
6
Brodmann (1909) area 46
6
globus pallidus
6
mammary gland epithelial cell
6
middle frontal gyrus
6
muscle cell
6
naive T cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
putamen
6
right cardiac atrium
6
skeletal muscle satellite cell
5
Ammon's horn
5
GM12878
5
cerebellar cortex
5
dermis blood vessel endothelial cell
5
fibroblast of lung
5
heart right ventricle
5
hepatic stellate cell
5
lung
5
mature neutrophil
5
medulla oblongata
5
mesenchymal stem cell
5
midbrain
5
neutrophil
5
pons
5
skeletal muscle myoblast
5
subcutaneous abdominal adipose tissue
5
superior temporal gyrus
5
uterus
4
A172
4
ACC112
4
ACHN
4
C4-2B
4
Caki2
4
DOHH2
4
GM04503
4
GM04504
4
GM23248
4
GM23338
4
H4
4
H54
4
HAP-1
4
HCT116
4
HL-60
4
HS-27A
4
HS-5
4
HT-29
4
HT1080
4
KBM-7
4
KMS-11
4
LHCN-M2
4
Loucy
4
M059J
4
MM.1S
4
NB4
4
NCI-H929
4
OCI-LY1
4
OCI-LY3
4
OCI-LY7
4
PC-3
4
RCC 7860
4
RPMI7951
4
RPMI8226
4
RWPE1
4
RWPE2
4
SJSA1
4
SK-MEL-5
4
SU-DHL-6
4
SW480
4
adipocyte
4
bipolar neuron
4
cartilage tissue
4
fibroblast of dermis
4
glutamatergic neuron
4
heart
4
iPS-11a
4
iPS-15b
4
iPS-18a
4
iPS-18c
4
iPS-20b
4
mucosa of stomach
4
occipital lobe
4
pancreatic alpha cell
4
pancreatic beta cell
4
peripheral blood mononuclear cell
4
right lobe of liver
4
urinary bladder
3
8988T
3
AG08395 cell
3
AG08396 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
AG20443
3
COLO829
3
Caco-2 cell
3
GM10248
3
GM10266
3
GM12875
3
GM19238
3
GM19239
3
GM19240
3
HPDE6-E6E7
3
HuH-7
3
HuH-7.5
3
KARPAS-422 cell
3
LoVo cell
3
MCF 10A
3
NCI-H226 cell
3
VCaP cell
3
fibroblast of cardiac tissue
3
iPS-NIHi11
3
iPS-NIHi7
3
inferior parietal cortex
3
inflammatory macrophage
3
luminal epithelial cell of mammary gland
Organ
5
lung
Life stage
56
embryonic
5
adult
3
child
1
young adult
Date released
3
September, 2022
2
February, 2021
Software used
2
encode-ccres
2
r
1
chromhmm
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
files.file_type!
tsv
Showing 5 of 5 results
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Download
FileSet
DSR655KYY
released
Annotation file set
: Candidate regulatory elements for BSS01190 lung from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR696RKA
released
Annotation file set
: Target gene predictions for BSS01190 lung from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR482VBY
released
Annotation file set
: Chromatin states for BSS01190 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR235EOO
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE lung
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR128VDF
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE lung
Lab:
AMP-T2D consortium
Project:
AMP