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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
caQTL
1
candidate regulatory elements
1
chromatin state
1
eQTL
1
gene expression
1
target gene predictions
Annotation Category
4
cis-regulatory elements
2
Genetic variant effects
1
Gene expression levels
1
Target gene links
Annotation type Category
3
snATAC-seq
2
ChIP-seq
1
DNase-seq
1
RNA-seq
1
pCHi-C
1
snRNA-seq
Available data
6
bed bed3+
1
bed bed9
1
bigBed bed9
1
bigWig
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
in vitro differentiated cells
7
primary cell
1
stem cell
Biosample term
89
heart
85
stomach
79
kidney
70
brain
68
lung
67
muscle of arm
64
HeLa-S3
63
small intestine
62
adrenal gland
61
A549
58
muscle of leg
58
placenta
55
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
53
H1-hESC
52
left lung
47
liver
47
thymus
45
monocyte
45
right lung
44
islet of Langerhans
42
right kidney
40
B cell
40
K562
40
renal cortex interstitium
40
renal pelvis
39
endothelial cell
39
retina
36
left kidney
34
spinal cord
34
spleen
33
heart left ventricle
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
31
adipose tissue
31
macrophage
29
fibroblast
29
hepatocyte
27
regulatory T cell
25
tibial nerve
24
MCF-7
24
body of pancreas
23
T-helper 1 cell
23
epithelial cell of proximal tubule
23
sigmoid colon
22
CD8-positive, alpha-beta memory T cell
22
EndoC_BH1
22
pericyte cell
21
T-helper 17 cell
21
caudate nucleus
21
glomerular endothelial cell
21
pancreas
21
subcutaneous adipose tissue
20
CD8-positive, alpha-beta T cell
20
T cell
20
coronary artery
20
mononuclear cell
20
natural killer cell
20
ovary
20
pancreatic ductal cell
20
pigmented layer of retina
20
psoas muscle
20
smooth muscle cell
19
endothelial cell of umbilical vein
19
foreskin keratinocyte
19
heart right ventricle
19
right atrium auricular region
18
HFFc6
18
gastrocnemius medialis
18
keratinocyte
18
pancreatic beta cell
18
thyroid gland
18
tibial artery
18
transverse colon
17
T-helper 2 cell
17
foreskin fibroblast
17
muscle of trunk
17
omental fat pad
17
pancreatic alpha cell
17
substantia nigra
17
trophoblast cell
16
astrocyte
16
chorionic villus
16
endothelial cell of hepatic sinusoid
16
fibroblast of lung
16
testis
15
CD4-positive, alpha-beta T cell
15
GM12878
15
H9
15
ascending aorta
15
frontal cortex
15
neutrophil
15
osteoblast
15
pancreatic acinar cell
15
pancreatic delta cell
15
skeletal muscle tissue
15
upper lobe of left lung
14
endocrine pancreas
14
fibroblast of cardiac tissue
14
layer of hippocampus
14
skeletal muscle myoblast
13
Peyer's patch
13
aorta
13
cerebellum
13
neurosphere
13
putamen
13
skeletal muscle satellite cell
12
Ammon's horn
12
fibroblast of dermis
12
left renal cortex interstitium
12
mammary gland epithelial cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
prostate gland
12
temporal lobe
11
HepG2
11
breast epithelium
11
erythroblast
11
excitatory neuron
11
glomerular visceral epithelial cell
11
left cardiac atrium
11
left renal pelvis
11
right renal pelvis
10
bronchial epithelial cell
10
epithelial cell of prostate
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
kidney tubule cell
10
pancreatic stellate cell
10
right renal cortex interstitium
10
thoracic aorta
10
trophoblast
9
22Rv1
9
SK-N-SH
9
colonic mucosa
9
esophagus
9
mammary epithelial cell
9
parathyroid adenoma
9
tongue
9
vagina
8
NAMALWA cell
8
breast cancer cell
8
choroid plexus epithelial cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
hepatic stellate cell
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
lymphoblastoid cell line
8
lymphocyte
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
skeletal muscle fiber
8
skin fibroblast
7
GM06990
7
GM12864
7
GM12865
7
HEK293
7
IMR-90
7
SK-N-DZ
7
T47D
7
angular gyrus
7
cardiac muscle cell
7
chorion membrane
7
endometrium adenocarcinoma
7
eye
7
fibroblast cell line
7
kidney glomerular epithelial cell
7
memory B cell
7
mesenchymal stem cell
7
renal cortical epithelial cell
7
retinal pigment epithelial cell
7
right lobe of liver
7
stomach smooth muscle
7
uterus
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
Brodmann (1909) area 46
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
Daoy
6
GM08714
6
GM10266
6
GM19240
6
HCT116
6
HUES8
6
LoVo cell
6
OCI-LY7
6
SJSA1
6
SK-N-MC
Organ
8
connective tissue
Life stage
2
adult
1
unknown
Date released
3
February, 2024
1
February, 2021
1
March, 2020
1
May, 2022
1
October, 2019
1
October, 2022
Software used
2
macs
1
chromhmm
1
deeptools
1
eigenmt
1
encode-ccres
1
nospecificsoft_customcode
1
qTLtools
1
r
1
rasqual
1
samtools
1
umitools
Lab
4
AMP-T2D consortium
4
Stephen Parker, UMich
Project
8
AMP
RFA
4
AMP
4
AMP2
annotation_type!
histone modifications
biosample_type!
in vitro differentiated cells
Showing 8 of 8 results
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Download
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR627LDJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR033HJN
released
Annotation file set
: Expression QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR543XVO
released
Annotation file set
: Cell type gene expression mean TPM and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR139NCZ
released
Annotation file set
: ChromHMM 15-state model for Mesenchymal Stem Cell from ENCODE ChIP-seq data.
Lab:
AMP-T2D consortium
Project:
AMP