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Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
4
target gene predictions
3
accessible chromatin
3
chromatin state
1
binding sites
caQTL
1
eQTL
1
gene expression
1
histone modifications
Annotation Category
4
Target gene links
1
Gene expression levels
1
cis-regulatory elements
Annotation type Category
3
ChIP-seq
3
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
1
snRNA-seq
Available data
5
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
4
in vitro differentiated cells
1
primary cell
1
stem cell
Biosample term
56
HeLa-S3
49
H1-hESC
25
K562
24
heart
22
kidney
21
A549
21
stomach
19
CD14-positive monocyte
19
HFFc6
19
endothelial cell
19
monocyte
18
adrenal gland
18
brain
18
epithelial cell of proximal tubule
18
hepatocyte
18
lung
16
muscle of arm
16
small intestine
15
glomerular endothelial cell
15
placenta
15
thymus
14
common myeloid progenitor, CD34-positive
14
islet of Langerhans
14
large intestine
14
neural progenitor cell
13
muscle of leg
12
B cell
12
adipose tissue
12
hematopoietic multipotent progenitor cell
12
left lung
12
muscle of back
11
cardiomyocytes
11
liver
11
pancreatic ductal cell
10
EndoC_BH1
10
GM12878
10
T-helper 1 cell
10
T-helper 17 cell
10
endothelial cell of hepatic sinusoid
10
regulatory T cell
9
CD4-positive, alpha-beta memory T cell
9
MCF-7
9
adipocyte
9
breast cancer cell
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
keratinocyte
9
left kidney
9
progenitor cell of endocrine pancreas
9
renal pelvis
9
right kidney
9
right lung
9
spinal cord
8
CD8-positive, alpha-beta T cell
8
H9
8
heart left ventricle
8
pituitary stalk
8
spleen
7
CD8-positive, alpha-beta memory T cell
7
body of pancreas
7
cardiomyocytes (cardiac muscle cell)
7
dendritic cell
7
fibroblast cell line
7
foreskin fibroblast
7
ovary
7
pericyte cell
7
renal cortex interstitium
7
smooth muscle cell
6
HepG2
6
T-helper 2 cell
6
endothelial cell of umbilical vein
6
fibroblast
6
fibroblast of lung
6
glomerular visceral epithelial cell
6
heart right ventricle
6
kidney interstitial cell
6
psoas muscle
5
HUES8
5
aorta
5
astrocyte
5
cardiac muscle cell
5
cardiac precursors (cardiac muscle cell)
5
embryonic stem cell
5
fibroblast of cardiac tissue
5
fibroblast of dermis
5
foreskin keratinocyte
5
gastrocnemius medialis
5
kidney loop of Henle thin ascending limb epithelial cell
5
lymphocyte
5
mammary gland epithelial cell
5
pancreas
5
pancreatic acinar cell
5
pancreatic beta cell
5
retina
5
sigmoid colon
4
CyT49
4
GM19238
4
GM19239
4
GM19240
4
IMR-90
4
Jurkat
4
SK-N-SH
4
T cell
4
adult endothelial progenitor cell
4
bone tissue
4
bronchial epithelial cell
4
caudate nucleus
4
cerebellum
4
chorionic villus
4
colon epithelial cell
4
coronary artery
4
endocrine pancreas
4
epithelial cell of prostate
4
erythroblast
4
gamma-delta T cell
4
glioblastoma multiforme cancer stem cell
4
iPSC derived cell line
4
kidney cortex collecting duct principal cell
4
macrophage
4
melanoma
4
mesenchymal stem cell
4
mononuclear cell
4
naive thymus-derived CD8-positive, alpha-beta T cell
4
natural killer cell
4
nephron progenitor
4
omental fat pad
4
osteoblast
4
pancreatic delta cell
4
prostate cancer cell line
4
testis
4
trophoblast cell
3
22Rv1
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
Ammon's horn
3
B Cell
3
BE(2)-C
3
BJ cell
3
BJAB cell
3
CD4-positive, alpha-beta T cell
3
Caco-2 cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
GM06990
3
GM08714
3
GM12864
3
GM12865
3
GM12875
3
GM12891
3
GM12892
3
GM18505
3
GM19099
3
GM19193
3
Glomerular Capillary Endothelial Cell
3
HAP-1
3
HCT-116 cell
3
HCT116
3
HEK293
3
HL-60
3
HT-29
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
KARPAS-422 cell
3
LoVo cell
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
MCF 10A cell
3
MM.1S
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
Organ
6
connective tissue
Life stage
1
adult
1
embryonic
Date released
2
September, 2022
1
February, 2021
1
February, 2024
1
March, 2020
1
May, 2021
Software used
3
r
1
abc
1
deeptools
1
macs
1
nospecificsoft_customcode
1
samtools
1
umitools
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
1
Stephen Parker, UMich
Project
6
AMP
RFA
5
AMP
1
AMP2
annotation_type!
caQTL
Showing 6 of 6 results
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Download
FileSet
DSR607MNF
released
Annotation file set
: Target gene predictions for BSS01261 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR391CWH
released
Annotation file set
: Target gene predictions for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR959CJP
released
Annotation file set
: Binding sites annotation for Others Mesenchymal_stem_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR543XVO
released
Annotation file set
: Cell type gene expression mean TPM and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP