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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
4
target gene predictions
3
chromatin state
2
accessible chromatin
1
binding sites
1
caQTL
1
eQTL
1
gene expression
1
histone modifications
Annotation Category
4
Target gene links
2
cis-regulatory elements
Annotation type Category
3
DNase-seq
2
ChIP-seq
2
snATAC-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
6
bed bed3+
1
bigWig
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
3
in vitro differentiated cells
2
primary cell
1
stem cell
Biosample term
55
HeLa-S3
39
H1-hESC
25
retina
23
K562
23
endothelial cell
heart
23
kidney
21
stomach
20
fibroblast
20
pericyte cell
20
pigmented layer of retina
19
A549
19
CD14-positive monocyte
19
HFFc6
19
monocyte
17
adrenal gland
17
brain
17
lung
17
muscle of arm
17
small intestine
16
B cell
16
macrophage
16
smooth muscle cell
15
muscle of leg
15
neural progenitor cell
15
placenta
14
common myeloid progenitor, CD34-positive
14
large intestine
14
thymus
13
excitatory neuron
13
left lung
13
liver
13
muscle of back
12
astrocyte
11
adipocyte
11
hepatocyte
11
pancreatic beta cell
11
right kidney
11
right lung
10
T cell
10
adipose tissue
10
heart left ventricle
10
hematopoietic multipotent progenitor cell
10
pancreatic acinar cell
10
pancreatic alpha cell
10
pancreatic ductal cell
10
pituitary stalk
10
renal cortex interstitium
10
renal pelvis
9
CD4-positive, alpha-beta memory T cell
9
CD8-positive, alpha-beta T cell
9
EndoC_BH1
9
left kidney
9
pancreatic delta cell
9
retinal pigment epithelial cell
9
spleen
8
GM12878
8
H9
8
glutamatergic neuron
8
natural killer cell
8
pancreas
8
psoas muscle
8
spinal cord
7
CD8-positive, alpha-beta memory T cell
7
colon epithelial cell
7
embryonic stem cell
7
erythroblast
7
islet of Langerhans
7
keratinocyte
7
lymphocyte
7
regulatory T cell
7
sigmoid colon
7
skeletal muscle satellite cell
7
trophoblast cell
6
MCF-7
6
coronary artery
6
dendritic cell
6
endothelial cell of hepatic sinusoid
6
fibroblast of cardiac tissue
6
heart right ventricle
6
memory B cell
6
mesenchymal stem cell
6
mononuclear cell
6
olfactory receptor cell
6
ovary
6
type II pneumocyte
5
SGBS preadipocytes
5
T-helper 1 cell
5
T-helper 17 cell
5
T-helper 2 cell
5
body of pancreas
5
chondrocyte
5
cortical cell of adrenal gland
5
endothelial cell of umbilical vein
5
gabaergic neuron
5
gastrocnemius medialis
5
inhibitory neuron
5
luminal epithelial cell of mammary gland
5
mammary gland epithelial cell
5
muscle of trunk
5
naive B cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
osteoblast
5
pancreatic stellate cell
5
skeletal muscle fiber
5
thyroid gland
5
tibial nerve
5
transverse colon
4
CD4-positive, alpha-beta T cell
4
CyT49
4
HUES8
4
HepG2
4
aorta
4
blood vessel smooth muscle cell
4
cardiac muscle cell
4
caudate nucleus
4
chorionic villus
4
endocrine pancreas
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
iPSC derived cell line
4
megakaryocyte
4
omental fat pad
4
pancreatic A cell
4
right atrium auricular region
4
skeletal muscle myoblast
4
skin fibroblast
4
smooth muscle cell of the esophagus
4
tibial artery
4
type B pancreatic cell
4
type I muscle cell
4
type I pneumocyte
4
type II muscle cell
3
cardiac fibroblast
3
Ammon's horn
3
CD4-positive helper T cell
3
HCT116
3
Peyer's patch
3
SK-N-SH
3
activated CD4-positive, alpha-beta T cell
3
ascending aorta
3
basal cell
3
breast epithelium
3
cardiomyocytes (cardiac muscle cell)
3
cerebellum
3
chorion membrane
3
ciliated cell
3
club cell
3
endocardial cell
3
endometrium adenocarcinoma
3
enteric neuron
3
enterocyte
3
epithelial cell of prostate
3
esophagus
3
foreskin fibroblast
3
frontal cortex
3
glomerular visceral epithelial cell
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
kidney tubule cell
3
layer of hippocampus
3
left renal cortex interstitium
3
left renal pelvis
3
mesendoderm
3
mesothelial cell
3
naive T cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
neuron
3
neurosphere
3
neutrophil
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic polypeptide-secreting cell
3
plasma cell
3
plasmacytoid dendritic cell
3
right renal cortex interstitium
3
right renal pelvis
3
schwann cell
3
skeletal muscle tissue
3
testis
3
thoracic aorta
3
trophoblast
3
upper lobe of left lung
2
22Rv1
2
A673
2
BJAB cell
2
Brodmann (1909) area 46
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
H7-hESC
2
HAP-1
2
HT-29
2
IMR-90
2
Jurkat
2
KARPAS-422 cell
Organ
6
connective tissue
Life stage
1
adult
1
embryonic
1
unknown
Date released
2
September, 2022
1
February, 2024
June, 2020
1
March, 2020
1
May, 2021
1
May, 2022
Software used
2
macs
2
r
1
abc
1
nospecificsoft_customcode
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
1
Stephen Parker, UMich
Project
6
AMP
RFA
5
AMP
1
AMP2
biosample_term_name!
heart
month_released!
June, 2020
Showing 6 of 6 results
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Download
FileSet
DSR607MNF
released
Annotation file set
: Target gene predictions for BSS01261 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR391CWH
released
Annotation file set
: Target gene predictions for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP