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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
3
accessible chromatin
3
chromatin state
3
target gene predictions
1
binding sites
1
caQTL
1
eQTL
1
gene expression
1
histone modifications
Annotation Category
3
Target gene links
3
cis-regulatory elements
Annotation type Category
4
DNase-seq
2
ChIP-seq
2
snATAC-seq
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
6
bed bed3+
1
bigWig
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
3
in vitro differentiated cells
2
primary cell
1
stem cell
Biosample term
54
HeLa-S3
39
H1-hESC
24
heart
23
K562
22
stomach
19
A549
19
HFFc6
18
brain
17
kidney
17
lung
17
muscle of arm
17
small intestine
16
adrenal gland
16
endothelial cell
16
fibroblast
15
B cell
15
macrophage
15
muscle of leg
15
placenta
14
large intestine
14
thymus
13
common myeloid progenitor, CD34-positive
13
left lung
13
muscle of back
12
excitatory neuron
12
right lung
11
T cell
11
hematopoietic multipotent progenitor cell
11
pericyte cell
11
renal pelvis
11
right kidney
10
liver
10
renal cortex interstitium
10
smooth muscle cell
9
CD4-positive, alpha-beta memory T cell
9
heart left ventricle
9
left kidney
9
pancreatic alpha cell
9
pancreatic beta cell
9
spinal cord
8
GM12878
8
astrocyte
8
pancreas
8
pancreatic delta cell
8
pancreatic ductal cell
8
psoas muscle
8
spleen
7
CD8-positive, alpha-beta memory T cell
7
H9
7
adipose tissue
7
fibroblast of cardiac tissue
7
lymphocyte
7
natural killer cell
7
pancreatic acinar cell
7
regulatory T cell
7
sigmoid colon
6
MCF-7
6
erythroblast
6
heart right ventricle
6
mesenchymal stem cell
6
mononuclear cell
6
olfactory receptor cell
6
ovary
6
skeletal muscle satellite cell
6
trophoblast cell
5
CD8-positive, alpha-beta T cell
5
HUES8
5
adipocyte
5
caudate nucleus
5
endothelial cell of umbilical vein
5
foreskin keratinocyte
5
gastrocnemius medialis
5
hepatocyte
5
inhibitory neuron
5
mammary gland epithelial cell
5
monocyte
5
neural progenitor cell
5
pancreatic stellate cell
5
retina
5
skeletal muscle fiber
5
skin fibroblast
5
thyroid gland
5
tibial nerve
5
transverse colon
4
Ammon's horn
4
CD14-positive monocyte
4
CyT49
4
Peyer's patch
4
T-helper 1 cell
4
aorta
4
body of pancreas
4
chorion membrane
4
chorionic villus
4
colon epithelial cell
4
endocrine pancreas
4
frontal cortex
4
hepatic stellate cell
4
iPSC derived cell line
4
keratinocyte
4
kidney tubule cell
4
megakaryocyte
4
muscle of trunk
4
osteoblast
4
retinal pigment epithelial cell
4
right atrium auricular region
4
skeletal muscle myoblast
4
testis
4
tibial artery
4
trophoblast
4
type II pneumocyte
4
upper lobe of left lung
3
cardiac fibroblast
3
CD4-positive, alpha-beta T cell
3
GM18507
3
GM19240
3
HCT116
3
HepG2
3
NAMALWA cell
3
SK-N-DZ
3
T-helper 17 cell
3
T-helper 2 cell
3
activated CD4-positive, alpha-beta T cell
3
ascending aorta
3
breast epithelium
3
bronchial epithelial cell
3
cardiomyocytes (cardiac muscle cell)
3
cerebellum
3
choroid plexus epithelial cell
3
coronary artery
3
cortical cell of adrenal gland
3
endometrium adenocarcinoma
3
endothelial cell of lymphatic vessel
3
enterocyte
3
epithelial cell of prostate
3
esophagus
3
esophagus muscularis mucosa
3
esophagus squamous epithelium
3
eye
3
fibroblast of dermis
3
fibroblast of lung
3
foreskin fibroblast
3
globus pallidus
3
glomerular endothelial cell
3
glomerular visceral epithelial cell
3
immortal human breast epithelial cell line cell
3
islet of Langerhans
3
layer of hippocampus
3
left renal cortex interstitium
3
left renal pelvis
3
limb
3
luminal epithelial cell of mammary gland
3
medulla oblongata
3
memory B cell
3
mesendoderm
3
midbrain
3
naive B cell
3
naive T cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
naive thymus-derived CD8-positive, alpha-beta T cell
3
neurosphere
3
neutrophil
3
occipital lobe
3
omental fat pad
3
pancreatic polypeptide-secreting cell
3
pons
3
prostate gland
3
putamen
3
renal cortical epithelial cell
3
right renal cortex interstitium
3
right renal pelvis
3
skeletal muscle tissue
3
superior temporal gyrus
3
tongue
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
3
urinary bladder
2
22Rv1
2
A172
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
BE(2)-C
2
BJ cell
2
Brodmann (1909) area 46
2
CD1c-positive myeloid dendritic cell
2
CMK
2
Caco-2 cell
2
Caki2
2
Daoy
2
GM03348
2
GM04503
2
GM04504
2
GM06990
2
GM10248
2
GM10266
Organ
6
connective tissue
Life stage
1
adult
1
embryonic
1
unknown
Date released
2
September, 2022
1
February, 2024
1
June, 2020
1
March, 2020
1
May, 2022
Software used
3
macs
2
r
1
nospecificsoft_customcode
Lab
5
AMP-T2D consortium
1
Stephen Parker, UMich
Project
6
AMP
RFA
5
AMP
1
AMP2
biosample_term_name!
naive thymus-derived CD8-positive, alpha-beta T cell
annotation_type_category!
ATAC-seq
Showing 6 of 6 results
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Download
FileSet
DSR607MNF
released
Annotation file set
: Target gene predictions for BSS01261 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR391CWH
released
Annotation file set
: Target gene predictions for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR497YXK
released
Annotation file set
: Accessible chromatin annotation for Others Mesenchymal stem cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP