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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
5
target gene predictions
4
candidate regulatory elements
3
accessible chromatin
3
binding sites
3
chromatin state
2
histone modifications
1
caQTL
1
eQTL
1
gene expression
Annotation Category
5
Target gene links
3
cis-regulatory elements
Annotation type Category
6
DNase-seq
2
ATAC-seq
2
ChIP-seq
2
H3K27ac ChIP-Seq
1
pCHi-C
1
snATAC-seq
Available data
9
bed bed3+
bigWig
File set status
8
released
Genome assembly (visualization)
8
hg19
Organism
8
Homo sapiens
Biosample type
4
in vitro differentiated cells
2
cell line
1
primary cell
1
stem cell
Biosample term
55
HeLa-S3
40
H1-hESC
24
K562
24
stomach
22
heart
20
A549
19
CD14-positive monocyte
19
HFFc6
18
adrenal gland
18
small intestine
17
brain
17
lung
16
muscle of arm
16
placenta
15
kidney
15
large intestine
15
muscle of leg
15
neural progenitor cell
15
thymus
14
common myeloid progenitor, CD34-positive
13
left lung
13
muscle of back
12
B cell
12
liver
12
right lung
11
hematopoietic multipotent progenitor cell
10
adipocyte
10
pericyte cell
10
pituitary stalk
10
renal pelvis
10
retina
10
right kidney
10
spinal cord
9
CD4-positive, alpha-beta memory T cell
9
GM12878
9
adipose tissue
9
endothelial cell
9
left kidney
9
psoas muscle
9
renal cortex interstitium
9
smooth muscle cell
9
spleen
8
EndoC_BH1
8
H9
8
sigmoid colon
8
trophoblast cell
7
CD8-positive, alpha-beta memory T cell
7
MCF-7
7
embryonic stem cell
7
heart left ventricle
7
lymphocyte
7
ovary
7
pancreas
7
pigmented layer of retina
6
CD8-positive, alpha-beta T cell
6
T cell
6
dendritic cell
6
fibroblast
6
fibroblast of cardiac tissue
6
gastrocnemius medialis
6
glutamatergic neuron
6
macrophage
6
mesenchymal stem cell
6
mononuclear cell
6
natural killer cell
6
olfactory receptor cell
6
regulatory T cell
6
retinal pigment epithelial cell
6
thyroid gland
6
transverse colon
5
HUES8
5
body of pancreas
5
chondrocyte
5
endothelial cell of umbilical vein
5
foreskin keratinocyte
5
heart right ventricle
5
hepatocyte
5
keratinocyte
5
mammary gland epithelial cell
5
monocyte
5
muscle of trunk
5
skin fibroblast
4
CD4-positive helper T cell
4
CyT49
4
HepG2
4
Peyer's patch
4
SGBS preadipocytes
4
T-helper 1 cell
4
aorta
4
astrocyte
4
breast epithelium
4
caudate nucleus
4
chorion membrane
4
chorionic villus
4
colon epithelial cell
4
endocrine pancreas
4
endothelial cell of hepatic sinusoid
4
epithelial cell of prostate
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin fibroblast
4
iPSC derived cell line
4
mesendoderm
4
osteoblast
4
pancreatic delta cell
4
pancreatic ductal cell
4
skeletal muscle myoblast
4
testis
4
tibial nerve
4
trophoblast
4
upper lobe of left lung
3
Ammon's horn
3
CD4-positive, alpha-beta T cell
3
GM18507
3
GM19240
3
H7-hESC
3
HAP-1
3
HCT116
3
HT-29
3
IMR-90
3
Jurkat
3
KARPAS-422 cell
3
LoVo cell
3
MM.1S
3
NAMALWA cell
3
OCI-LY7
3
PC-9
3
SK-N-DZ
3
SK-N-SH
3
T-helper 17 cell
3
T-helper 2 cell
3
U937
3
bipolar neuron
3
bronchial epithelial cell
3
cardiomyocytes (cardiac muscle cell)
3
coronary artery
3
endometrium adenocarcinoma
3
esophagus
3
esophagus muscularis mucosa
3
esophagus squamous epithelium
3
eye
3
frontal cortex
3
gabaergic neuron
3
immortal human breast epithelial cell line cell
3
islet of Langerhans
3
kidney tubule cell
3
layer of hippocampus
3
limb
3
luminal epithelial cell of mammary gland
3
naive T cell
3
neurosphere
3
neutrophil
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
prostate gland
3
right atrium auricular region
3
skeletal muscle satellite cell
3
skeletal muscle tissue
3
tibial artery
3
tongue
3
type B pancreatic cell
3
urinary bladder
3
uterus
2
22Rv1
2
A172
2
A673
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
BE(2)-C
2
BJ cell
2
BJAB cell
2
Brodmann (1909) area 46
2
CD1c-positive myeloid dendritic cell
2
CMK
2
Caco-2 cell
2
Caki2
2
Daoy
2
GM03348
2
GM04503
2
GM04504
2
GM06990
2
GM10248
2
GM10266
2
GM12864
2
GM12865
2
GM19238
2
GM19239
2
GM23248
2
H4
2
HCT-116 cell
2
HEK293
2
HL-60
2
HUES6
Organ
6
connective tissue
2
intestine
2
large intestine
Life stage
1
adult
1
embryonic
Date released
2
June, 2020
2
May, 2021
2
September, 2022
1
February, 2024
1
March, 2020
Software used
3
macs
2
abc
2
r
1
nospecificsoft_customcode
Lab
5
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
1
Stephen Parker, UMich
Project
8
AMP
RFA
7
AMP
1
AMP2
files.file_type!
bigWig
Showing 8 of 8 results
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Download
FileSet
DSR607MNF
released
Annotation file set
: Target gene predictions for BSS01261 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR391CWH
released
Annotation file set
: Target gene predictions for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR355NCA
released
Annotation file set
: enhancer-gene predicton of HCT116-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR497YXK
released
Annotation file set
: Accessible chromatin annotation for Others Mesenchymal stem cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR889UTS
released
Annotation file set
: Accessible chromatin annotation for Digestive tract HCT 116 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP