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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
caQTL
1
candidate regulatory elements
1
chromatin state
1
eQTL
1
gene expression
1
target gene predictions
Annotation Category
1
Target gene links
1
cis-regulatory elements
Annotation type Category
1
pCHi-C
1
snATAC-seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
in vitro differentiated cells
1
primary cell
1
stem cell
Biosample term
55
HeLa-S3
40
H1-hESC
26
retina
25
heart
24
K562
24
kidney
24
stomach
21
endothelial cell
21
monocyte
20
A549
20
pericyte cell
20
pigmented layer of retina
19
CD14-positive monocyte
19
HFFc6
18
adrenal gland
18
brain
18
fibroblast
18
small intestine
17
lung
17
muscle of arm
16
B cell
16
macrophage
16
muscle of leg
16
placenta
15
large intestine
15
thymus
14
common myeloid progenitor, CD34-positive
13
left lung
13
liver
13
muscle of back
13
smooth muscle cell
12
astrocyte
12
excitatory neuron
12
right lung
11
hepatocyte
11
pancreatic beta cell
11
pancreatic ductal cell
11
renal pelvis
11
right kidney
10
adipose tissue
10
heart left ventricle
10
pancreas
10
pancreatic acinar cell
10
pancreatic alpha cell
10
pituitary stalk
10
renal cortex interstitium
10
spinal cord
10
spleen
9
CD4-positive, alpha-beta memory T cell
9
CD8-positive, alpha-beta T cell
9
EndoC_BH1
9
GM12878
9
T cell
9
left kidney
9
pancreatic delta cell
9
psoas muscle
9
regulatory T cell
8
H9
8
fibroblast of cardiac tissue
8
glutamatergic neuron
8
islet of Langerhans
8
natural killer cell
8
sigmoid colon
7
CD8-positive, alpha-beta memory T cell
7
MCF-7
7
colon epithelial cell
7
erythroblast
7
keratinocyte
7
lymphocyte
7
osteoblast
7
ovary
6
T-helper 1 cell
6
coronary artery
6
endothelial cell of hepatic sinusoid
6
endothelial cell of umbilical vein
6
gastrocnemius medialis
6
heart right ventricle
6
memory B cell
6
mononuclear cell
6
olfactory receptor cell
6
skeletal muscle satellite cell
6
thyroid gland
6
tibial nerve
6
transverse colon
6
trophoblast cell
6
type II pneumocyte
5
HUES8
5
HepG2
5
T-helper 17 cell
5
T-helper 2 cell
5
body of pancreas
5
caudate nucleus
5
cortical cell of adrenal gland
5
gabaergic neuron
5
inhibitory neuron
5
luminal epithelial cell of mammary gland
5
mammary gland epithelial cell
5
muscle of trunk
5
naive B cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
pancreatic stellate cell
5
right atrium auricular region
5
skeletal muscle fiber
5
skin fibroblast
5
tibial artery
4
Ammon's horn
4
CD4-positive, alpha-beta T cell
4
CyT49
4
Peyer's patch
4
aorta
4
blood vessel smooth muscle cell
4
breast epithelium
4
chorion membrane
4
chorionic villus
4
endocrine pancreas
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
epithelial cell of prostate
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin fibroblast
4
foreskin keratinocyte
4
frontal cortex
4
glomerular visceral epithelial cell
4
hepatic stellate cell
4
iPSC derived cell line
4
kidney tubule cell
4
megakaryocyte
4
omental fat pad
4
pancreatic A cell
4
retinal pigment epithelial cell
4
skeletal muscle myoblast
4
smooth muscle cell of the esophagus
4
testis
4
trophoblast
4
type B pancreatic cell
4
type I pneumocyte
4
upper lobe of left lung
3
cardiac fibroblast
3
CD4-positive helper T cell
3
GM18507
3
GM19240
3
H7-hESC
3
HAP-1
3
HCT116
3
HT-29
3
IMR-90
3
Jurkat
3
KARPAS-422 cell
3
LoVo cell
3
MM.1S
3
NAMALWA cell
3
OCI-LY7
3
PC-9
3
SK-N-DZ
3
SK-N-SH
3
U937
3
activated CD4-positive, alpha-beta T cell
3
ascending aorta
3
basal cell
3
bronchial epithelial cell
3
cerebellum
3
choroid plexus epithelial cell
3
ciliated cell
3
club cell
3
endocardial cell
3
endometrium adenocarcinoma
3
enteric neuron
3
enterocyte
3
esophagus
3
esophagus muscularis mucosa
3
esophagus squamous epithelium
3
eye
3
globus pallidus
3
glomerular endothelial cell
3
immortal human breast epithelial cell line cell
3
kidney glomerular epithelial cell
3
layer of hippocampus
3
left renal cortex interstitium
3
left renal pelvis
3
limb
3
medulla oblongata
3
mesothelial cell
3
midbrain
3
naive T cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
neurosphere
3
neutrophil
3
occipital lobe
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic polypeptide-secreting cell
3
plasma cell
3
plasmacytoid dendritic cell
3
pons
3
prostate gland
3
putamen
3
renal cortical epithelial cell
3
right renal cortex interstitium
3
right renal pelvis
Organ
2
connective tissue
Date released
1
February, 2024
1
March, 2020
May, 2022
Software used
1
macs
1
nospecificsoft_customcode
Lab
1
AMP-T2D consortium
1
Stephen Parker, UMich
Project
2
AMP
RFA
1
AMP
1
AMP2
month_released!
May, 2022
biosample_type!
in vitro differentiated cells
Showing 2 of 2 results
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Download
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP