Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
2
candidate regulatory elements
2
target gene predictions
1
binding sites
1
caQTL
1
chromatin state
1
eQTL
1
gene expression
1
histone modifications
Annotation Category
3
cis-regulatory elements
2
Target gene links
Annotation type Category
2
DNase-seq
2
snATAC-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
5
bed bed3+
1
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
2
in vitro differentiated cells
2
primary cell
1
stem cell
Biosample term
52
HeLa-S3
39
H1-hESC
23
endothelial cell
23
retina
20
fibroblast
20
pigmented layer of retina
19
HFFc6
19
monocyte
19
pericyte cell
18
K562
17
macrophage
15
CD14-positive monocyte
15
smooth muscle cell
13
excitatory neuron
11
astrocyte
11
neural progenitor cell
11
pancreatic ductal cell
10
adipocyte
10
hepatocyte
10
kidney
10
pancreatic acinar cell
10
pancreatic beta cell
10
pituitary stalk
9
EndoC_BH1
9
pancreatic alpha cell
9
retinal pigment epithelial cell
8
B cell
8
CD8-positive, alpha-beta T cell
8
GM12878
8
glutamatergic neuron
8
pancreas
7
H9
7
T cell
7
embryonic stem cell
7
erythroblast
7
islet of Langerhans
7
liver
7
pancreatic delta cell
6
SGBS preadipocytes
6
colon epithelial cell
6
dendritic cell
6
endothelial cell of hepatic sinusoid
6
heart
6
lymphocyte
6
olfactory receptor cell
6
osteoblast
6
skeletal muscle satellite cell
6
type II pneumocyte
5
HUES8
5
chondrocyte
5
cortical cell of adrenal gland
5
fibroblast of cardiac tissue
5
gabaergic neuron
5
heart left ventricle
5
inhibitory neuron
5
keratinocyte
5
mesenchymal stem cell
5
natural killer cell
5
pancreatic stellate cell
5
psoas muscle
5
skeletal muscle fiber
5
stomach
4
CD4-positive helper T cell
4
CD4-positive, alpha-beta T cell
4
CyT49
4
HepG2
4
adipose tissue
4
adrenal gland
4
blood vessel smooth muscle cell
4
coronary artery
4
endothelial cell of lymphatic vessel
4
endothelial cell of umbilical vein
4
enteric smooth muscle cell
4
iPSC derived cell line
4
luminal epithelial cell of mammary gland
4
megakaryocyte
4
memory B cell
4
pancreatic A cell
4
regulatory T cell
4
skin fibroblast
4
smooth muscle cell of the esophagus
4
spleen
4
thymus
4
type B pancreatic cell
4
type I muscle cell
4
type I pneumocyte
4
type II muscle cell
3
cardiac fibroblast
3
Ammon's horn
3
Jurkat
3
U937
3
activated CD4-positive, alpha-beta T cell
3
basal cell
3
cardiac muscle cell
3
cardiomyocytes (cardiac muscle cell)
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
enterocyte
3
glomerular visceral epithelial cell
3
heart right ventricle
3
hepatic stellate cell
3
mammary gland epithelial cell
3
mesendoderm
3
mesothelial cell
3
muscle of leg
3
naive B cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
ovary
3
pancreatic polypeptide-secreting cell
3
right atrium auricular region
3
schwann cell
3
sigmoid colon
3
skeletal muscle myoblast
3
small intestine
3
spinal cord
3
tibial artery
3
tibial nerve
3
trophoblast cell
2
A549
2
BJAB cell
2
GM18507
2
GM19240
2
H7-hESC
2
HAP-1
2
HCT-116 cell
2
HCT116
2
HT-29
2
IMR-90
2
KARPAS-422 cell
2
LNCAP
2
LoVo cell
2
MCF 10A cell
2
MCF-7
2
MDA-MB-231 cell
2
MM.1S
2
Muller cell
2
NCCIT cell
2
OCI-LY7
2
PC-9
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Rh-4 cell
2
T-cell
2
THP-1
2
activated CD8-positive, alpha-beta T cell
2
acute myeloid leukemia cell
2
adipose-derived stem cell
2
alveolar macrophage
2
aorta
2
basal cell of epidermis
2
bipolar neuron
2
bone marrow cell
2
brain
2
brain pericyte
2
breast epithelium
2
capillary endothelial cell
2
cardiac endothelial cell
2
caudate nucleus
2
choroid plexus epithelial cell
2
colon goblet cell
2
conventional dendritic cell
2
differentiating adipose-derived stem cell
2
eccrine cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
epithelial cell of prostate
2
erythroid cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast cell line
2
foreskin fibroblast
2
foveolar cell of stomach
2
frontal cortex
2
gastrocnemius medialis
2
glial cell
2
globus pallidus
2
glomerular endothelial cell
2
granular cell of epidermis
2
intestinal tuft cell
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
large intestine
2
leukocyte
2
luteal cell
2
lymphocyte of B lineage (iPSC)
2
mammary epithelial cell
2
mast cell
2
mature NK T cell
2
medulla oblongata
2
melanocyte
2
mesangial cell
2
microglial cell
2
midbrain
2
myoepithelial cell
2
naive t cell
2
natural killer cell mediated cytotoxicity
Organ
5
connective tissue
Life stage
1
unknown
Date released
September, 2022
1
February, 2024
1
June, 2020
1
March, 2020
1
May, 2021
1
May, 2022
Software used
3
macs
1
abc
1
nospecificsoft_customcode
Lab
3
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
1
Stephen Parker, UMich
Project
5
AMP
RFA
4
AMP
1
AMP2
month_released!
September, 2022
Showing 5 of 5 results
table-tab-icon
matrix-icon
Download
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR497YXK
released
Annotation file set
: Accessible chromatin annotation for Others Mesenchymal stem cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP