Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
4
target gene predictions
3
accessible chromatin
3
chromatin state
1
binding sites
1
caQTL
1
eQTL
1
gene expression
1
histone modifications
Annotation Category
4
Target gene links
2
cis-regulatory elements
Annotation type Category
4
ChIP-seq
3
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
6
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
5
in vitro differentiated cells
1
stem cell
Biosample term
90
monocyte
56
HeLa-S3
42
H1-hESC
35
CD8-positive, alpha-beta T cell
26
K562
25
neural progenitor cell
22
A549
22
heart
21
stomach
20
brain
20
breast cancer cell
19
CD14-positive monocyte
19
HFFc6
17
adrenal gland
17
kidney
17
lung
17
placenta
16
muscle of arm
16
small intestine
16
thymus
15
large intestine
14
common myeloid progenitor, CD34-positive
13
liver
13
muscle of leg
12
B cell
12
left lung
12
muscle of back
12
neuroblastoma cell
11
GM12878
11
HepG2
11
MCF-7
11
hematopoietic multipotent progenitor cell
11
spinal cord
10
diffuse intrinsic pontine glioma
10
gastric cancer cell
10
keratinocyte
9
CD4-positive, alpha-beta memory T cell
9
Rhabdomyosarcoma
9
adipose tissue
9
endothelial cell
9
liposarcoma
9
renal pelvis
9
right kidney
9
right lung
8
B-lymphoblastoid cell line
8
H9
8
T-cell acute lymphoblastic leukemia
8
adipocyte
8
fibroblast cell line
8
foreskin fibroblast
8
hepatocyte
8
pituitary stalk
7
CD8-positive, alpha-beta memory T cell
7
cardiac muscle cell
7
esophageal adenocarcinoma
7
fibroblast
7
heart left ventricle
7
left kidney
7
lymphocyte
7
mammary gland epithelial cell
7
pericyte cell
7
renal cortex interstitium
7
spleen
6
Chondroid Chordoma
6
Jurkat
6
acute myeloid leukemia
6
bronchial epithelial cell
6
embryonic stem cell
6
endothelial cell of hepatic sinusoid
6
foreskin keratinocyte
6
hESC cell
6
mammary epithelial cell
6
neuroblastoma cell line
6
osteoblast
6
pancreas
6
psoas muscle
5
CyT49
5
Ewing sarcoma
5
GM19238
5
GM19239
5
GM19240
5
HUES8
5
IMR-90
5
T cell
5
astrocyte
5
body of pancreas
5
dendritic cell
5
endothelial cell of umbilical vein
5
epithelial cell of prostate
5
esophageal squamous cell carcinoma
5
fibroblast of cardiac tissue
5
fibroblast of dermis
5
fibroblast of lung
5
natural killer cell
5
neuronal stem cell
5
osteosarcoma
5
ovary
5
prostate cancer cell line
5
sigmoid colon
5
trophoblast cell
4
22Rv1
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
BE(2)-C
4
BJ cell
4
Caco-2 cell
4
GM06990
4
GM12864
4
GM12865
4
GM12875
4
GM12891
4
GM12892
4
GM18505
4
GM19099
4
GM19193
4
HAP-1
4
HCT-116 cell
4
HEK293
4
HL-60
4
HS-SY-2 cell
4
HT-29
4
KARPAS-422 cell
4
LoVo cell
4
MM.1S
4
Mantle cell lymphoma
4
NAMALWA cell
4
NT2-D1 cell
4
OCI-LY7
4
PC-9
4
RS4-11 cell
4
Rh-4 cell
4
SK-N-MC
4
SK-N-SH
4
Th1 cell
4
Tumor-derived cell line
4
U937
4
WERI-Rb-1
4
aorta
4
caudate nucleus
4
colon adenocarcinoma
4
dermal fibroblast
4
dermis lymphatic vessel endothelial cell
4
diffuse large B-cell lymphoma
4
endocrine pancreas
4
gastrocnemius medialis
4
heart right ventricle
4
layer of hippocampus
4
mesenchymal stem cell
4
mesendoderm
4
mononuclear cell
4
pancreatic ductal cell
4
prostate gland
4
retina
4
smooth muscle cell
4
squamous cell lung carcinoma
4
synovial sarcoma cell
4
tracheal epithelial cell
4
triple-negative breast cancer
3
B-lymphocyte
3
BJAB cell
3
CD1c-positive myeloid dendritic cell
3
CD4-positive helper T cell
3
CD4-positive, alpha-beta T cell
3
CMK
3
COLO-320 cell
3
COLO205
3
DND-41 cell
3
EndoC_BH1
3
GM08714
3
GM10847
3
GM12872
3
GM12873
3
GM18507
3
GM18526
3
GM18951
3
GM23248
3
H7-hESC
3
HAC cell
3
HBMEC cell
3
HCT116
3
HEK293-T-REx cell
3
HK-2 cell
3
HuH-7
3
LHCN-M2
3
LNCAP
3
MCF 10A cell
3
MDA-MB-231 cell
3
MG63
3
NCCIT cell
3
NHEK
3
Normal Human Astrocytes
3
OCI-LY1
3
PANC-1 cell
3
PC-3
3
Peyer's patch
3
RPMI8226
3
RWPE1
Organ
6
connective tissue
Life stage
1
adult
1
embryonic
Date released
2
February, 2021
2
September, 2022
1
March, 2020
1
May, 2021
Software used
2
macs
2
r
1
abc
1
nospecificsoft_customcode
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
Showing 6 of 6 results
table-tab-icon
matrix-icon
Download
FileSet
DSR607MNF
released
Annotation file set
: Target gene predictions for BSS01261 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR391CWH
released
Annotation file set
: Target gene predictions for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR337GCY
released
Annotation file set
: Histone modifications annotation for Others Mesenchymal_stem_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR959CJP
released
Annotation file set
: Binding sites annotation for Others Mesenchymal_stem_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP