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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
4
target gene predictions
3
accessible chromatin
3
chromatin state
1
binding sites
1
caQTL
1
eQTL
1
gene expression
1
histone modifications
Annotation Category
4
Target gene links
3
cis-regulatory elements
1
Gene expression levels
Annotation type Category
5
ChIP-seq
3
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
1
snRNA-seq
Available data
4
bed bed3+
3
bed bed9
1
bigBed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
3
GRCh38
Organism
8
Homo sapiens
Biosample type
5
in vitro differentiated cells
2
primary cell
1
stem cell
Biosample term
58
HeLa-S3
49
H1-hESC
44
heart
41
stomach
37
A549
37
kidney
35
brain
34
lung
32
adrenal gland
32
muscle of arm
32
small intestine
30
K562
29
muscle of leg
29
placenta
27
common myeloid progenitor, CD34-positive
27
large intestine
26
left lung
26
muscle of back
25
thymus
23
CD14-positive monocyte
22
right lung
21
hematopoietic multipotent progenitor cell
20
B cell
20
liver
20
right kidney
19
HFFc6
19
hepatocyte
18
CD4-positive, alpha-beta memory T cell
18
epithelial cell of proximal tubule
18
left kidney
18
monocyte
18
renal cortex interstitium
18
renal pelvis
17
adipose tissue
17
endothelial cell
16
glomerular endothelial cell
16
heart left ventricle
16
neural progenitor cell
15
islet of Langerhans
15
spinal cord
14
CD8-positive, alpha-beta memory T cell
14
adipocyte
14
regulatory T cell
14
spleen
13
T-helper 1 cell
13
T-helper 17 cell
12
mononuclear cell
12
psoas muscle
sigmoid colon
12
trophoblast cell
11
MCF-7
11
body of pancreas
11
cardiomyocytes
11
heart right ventricle
11
ovary
11
pericyte cell
10
GM12878
10
induced pluripotent stem cell
10
natural killer cell
10
pituitary stalk
10
smooth muscle cell
9
CD8-positive, alpha-beta T cell
9
EndoC_BH1
9
H9
9
T-helper 2 cell
9
aorta
9
endothelial cell of umbilical vein
9
extended pluripotent stem (EPS) cells
9
gastrocnemius medialis
9
muscle of trunk
9
pancreatic ductal cell
9
progenitor cell of endocrine pancreas
9
thyroid gland
8
T cell
8
caudate nucleus
8
chorionic villus
8
endocrine pancreas
8
fibroblast of lung
8
foreskin keratinocyte
8
keratinocyte
8
left cardiac atrium
8
lymphocyte
8
mesenchymal stem cell
8
pancreas
8
temporal lobe
8
tibial nerve
8
transverse colon
7
cardiomyocytes (cardiac muscle cell)
7
coronary artery
7
dendritic cell
7
embryonic stem cell
7
fibroblast of cardiac tissue
7
fibroblast of dermis
7
glomerular visceral epithelial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
layer of hippocampus
7
mammary gland epithelial cell
7
mature neutrophil
7
pancreatic delta cell
7
retina
7
skeletal muscle tissue
7
testis
6
CD4-positive, alpha-beta T cell
6
Peyer's patch
6
alternatively activated macrophage
6
angular gyrus
6
ascending aorta
6
astrocyte
6
cerebellum
6
chorion membrane
6
endometrium adenocarcinoma
6
frontal cortex
6
immortal human breast epithelial cell line cell
6
kidney interstitial cell
6
macrophage
6
naive T cell
6
neurosphere
6
olfactory receptor cell
6
omental fat pad
6
pancreatic acinar cell
6
pancreatic alpha cell
6
pancreatic beta cell
6
right atrium auricular region
6
right cardiac atrium
6
skeletal muscle myoblast
6
skeletal muscle satellite cell
5
CD14-positive, CD16-negative classical monocyte
5
HepG2
5
SK-N-SH
5
breast epithelium
5
cardiac precursors (cardiac muscle cell)
5
cingulate gyrus
5
colon epithelial cell
5
colonic mucosa
5
duodenal mucosa
5
epithelial cell of prostate
5
esophagus
5
foreskin fibroblast
5
inflammatory macrophage
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
kidney tubule cell
5
memory B cell
5
mesangial cell
5
mucosa of rectum
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
neutrophil
5
osteoblast
5
stomach smooth muscle
5
upper lobe of left lung
4
22Rv1
4
Ammon's horn
4
Brodmann (1909) area 46
4
CyT49
4
HCT116
4
HUES8
4
KARPAS-422 cell
4
LNCaP clone FGC
4
NAMALWA cell
4
SK-N-DZ
4
T47D
4
adult endothelial progenitor cell
4
bone tissue
4
bronchial epithelial cell
4
dermis blood vessel endothelial cell
4
dermis lymphatic vessel endothelial cell
4
endodermal cell
4
endothelial cell of hepatic sinusoid
4
erythroblast
4
esophagus muscularis mucosa
4
esophagus squamous epithelium
4
eye
4
fibroblast
4
fibroblast of breast
4
gamma-delta T cell
4
iPSC derived cell line
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
left renal cortex interstitium
4
left renal pelvis
4
limb
4
lower leg skin
4
luminal epithelial cell of mammary gland
4
mesendoderm
4
muscle cell
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
nephron progenitor
4
parathyroid adenoma
4
prostate gland
4
right renal cortex interstitium
4
right renal pelvis
4
skin fibroblast
4
subcutaneous adipose tissue
4
substantia nigra
4
thoracic aorta
4
tibial artery
4
trophoblast
4
vagina
Organ
8
connective tissue
Life stage
3
adult
2
embryonic
Date released
4
September, 2022
1
February, 2024
1
March, 2020
1
May, 2021
1
October, 2019
Software used
3
chromhmm
3
r
1
abc
1
deeptools
1
nospecificsoft_customcode
1
samtools
1
umitools
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
1
Stephen Parker, UMich
Project
8
AMP
RFA
7
AMP
1
AMP2
biosample_term_name!
sigmoid colon
Showing 8 of 8 results
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Download
FileSet
DSR607MNF
released
Annotation file set
: Target gene predictions for BSS01261 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR391CWH
released
Annotation file set
: Target gene predictions for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR073XBJ
released
Annotation file set
: Chromatin states for BSS01261 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR625MZJ
released
Annotation file set
: Chromatin states for BSS01260 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR543XVO
released
Annotation file set
: Cell type gene expression mean TPM and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR139NCZ
released
Annotation file set
: ChromHMM 15-state model for Mesenchymal Stem Cell from ENCODE ChIP-seq data.
Lab:
AMP-T2D consortium
Project:
AMP