Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
target gene predictions
3
candidate regulatory elements
2
chromatin state
1
accessible chromatin
1
binding sites
1
histone modifications
Annotation Category
4
Target gene links
2
cis-regulatory elements
Annotation type Category
4
ChIP-seq
3
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
4
bed bed3+
2
bed bed9
File set status
6
released
Genome assembly (visualization)
6
hg19
2
GRCh38
Organism
6
Homo sapiens
Biosample type
5
in vitro differentiated cells
primary cell
1
stem cell
Biosample term
58
HeLa-S3
41
H1-hESC
41
heart
40
stomach
37
A549
34
brain
33
lung
32
muscle of arm
32
small intestine
31
adrenal gland
30
K562
30
kidney
29
muscle of leg
29
placenta
27
large intestine
26
left lung
26
muscle of back
25
thymus
22
right lung
20
hematopoietic multipotent progenitor cell
20
right kidney
19
HFFc6
19
liver
18
left kidney
18
renal cortex interstitium
18
renal pelvis
15
heart left ventricle
15
spinal cord
14
adipose tissue
14
spleen
12
adipocyte
12
psoas muscle
sigmoid colon
11
MCF-7
10
GM12878
10
heart right ventricle
10
ovary
10
pituitary stalk
9
H9
9
body of pancreas
9
gastrocnemius medialis
9
muscle of trunk
9
neural progenitor cell
9
thyroid gland
9
transverse colon
8
aorta
8
chorionic villus
8
endocrine pancreas
8
lymphocyte
8
pancreas
7
caudate nucleus
7
layer of hippocampus
7
left cardiac atrium
7
temporal lobe
7
tibial nerve
6
Peyer's patch
6
angular gyrus
6
chorion membrane
6
coronary artery
6
dendritic cell
6
embryonic stem cell
6
endometrium adenocarcinoma
6
immortal human breast epithelial cell line cell
6
mesenchymal stem cell
6
retina
6
skeletal muscle tissue
6
testis
6
upper lobe of left lung
5
HepG2
5
SK-N-SH
5
ascending aorta
5
breast epithelium
5
cingulate gyrus
5
colonic mucosa
5
duodenal mucosa
5
esophagus
5
mucosa of rectum
5
right cardiac atrium
5
stomach smooth muscle
5
substantia nigra
5
thoracic aorta
5
tibial artery
5
trophoblast
4
22Rv1
4
Brodmann (1909) area 46
4
CyT49
4
HCT116
4
HUES8
4
KARPAS-422 cell
4
LNCaP clone FGC
4
NAMALWA cell
4
SK-N-DZ
4
T47D
4
cerebellum
4
endodermal cell
4
esophagus muscularis mucosa
4
esophagus squamous epithelium
4
eye
4
frontal cortex
4
iPSC derived cell line
4
islet of Langerhans
4
left renal cortex interstitium
4
left renal pelvis
4
limb
4
lower leg skin
4
mesendoderm
4
muscle cell
4
muscle layer of colon
4
muscle layer of duodenum
4
omental fat pad
4
parathyroid adenoma
4
prostate gland
4
right atrium auricular region
4
right renal cortex interstitium
4
right renal pelvis
4
tongue
4
urinary bladder
4
vagina
3
A673
3
Ammon's horn
3
GM18507
3
GM19238
3
GM19239
3
GM19240
3
H7-hESC
3
HAP-1
3
HT-29
3
IMR-90
3
LoVo cell
3
MM.1S
3
OCI-LY7
3
PC-9
3
Panc1
3
bipolar neuron
3
cardiomyocytes (cardiac muscle cell)
3
germinal matrix
3
iPS DF 19.11
3
rectum smooth muscle tissue
3
trophoblast cell
3
uterus
2
8988T
2
A172
2
ACC112
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG08395 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
AG20443
2
BE(2)-C
2
BJ cell
2
BJAB cell
2
C4-2B
2
CMK
2
COLO829
2
CWRU1
2
Caco-2 cell
2
Caki2
2
DND-41
2
DOHH2
2
Daoy
2
EH
2
EL
2
ELF-1
2
ELR
2
ES-I3
2
ESC derived cell line
2
G401
2
GM03348
2
GM04503
2
GM04504
2
GM06990
2
GM08714
2
GM10248
2
GM10266
2
GM12864
2
GM12865
2
GM12875
2
GM12891
2
GM12892
2
GM23248
2
GM23338
2
H4
2
H54
2
HEK293
2
HEK293T
2
HK-2 cell
2
HL-60
2
HPDE6-E6E7
2
HS-27A
2
HS-5
2
HT1080
2
HTR-8/Svneo
2
HUES48
2
HUES6
2
HUES64
2
HuH-7
Organ
6
connective tissue
Life stage
2
adult
2
embryonic
Date released
4
September, 2022
1
March, 2020
1
May, 2021
Software used
2
chromhmm
2
r
1
abc
1
nospecificsoft_customcode
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
biosample_term_name!
sigmoid colon
biosample_type!
primary cell
Showing 6 of 6 results
table-tab-icon
matrix-icon
Download
FileSet
DSR607MNF
released
Annotation file set
: Target gene predictions for BSS01261 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR391CWH
released
Annotation file set
: Target gene predictions for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR073XBJ
released
Annotation file set
: Chromatin states for BSS01261 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR625MZJ
released
Annotation file set
: Chromatin states for BSS01260 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP