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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
10
candidate regulatory elements
7
target gene predictions
5
chromatin state
2
accessible chromatin
2
binding sites
2
histone modifications
0
gene expression
Annotation Category
7
Target gene links
Annotation type Category
6
DNase-seq
5
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
7
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
3
in vitro differentiated cells
3
tissue
primary cell
1
stem cell
Biosample term
55
HeLa-S3
47
H1-hESC
23
K562
23
heart
22
stomach
21
kidney
19
A549
19
HFFc6
18
adrenal gland
18
lung
17
brain
17
small intestine
16
muscle of arm
15
placenta
14
large intestine
14
muscle of leg
14
thymus
13
left lung
13
muscle of back
12
islet of Langerhans
12
neural progenitor cell
11
adipose tissue
11
cardiomyocytes
11
hematopoietic multipotent progenitor cell
11
liver
11
right lung
10
induced pluripotent stem cell
10
pituitary stalk
10
right kidney
9
EndoC_BH1
9
extended pluripotent stem (EPS) cells
9
left kidney
9
progenitor cell of endocrine pancreas
9
renal cortex interstitium
9
renal pelvis
9
spleen
8
GM12878
8
H9
8
heart left ventricle
8
psoas muscle
8
spinal cord
7
adipocyte
7
body of pancreas
7
cardiomyocytes (cardiac muscle cell)
7
lymphocyte
7
ovary
7
sigmoid colon
6
MCF-7
6
dendritic cell
6
heart right ventricle
5
aorta
5
cardiac precursors (cardiac muscle cell)
5
gastrocnemius medialis
5
muscle of trunk
5
pancreas
5
subcutaneous adipose tissue
5
thyroid gland
5
tibial nerve
5
transverse colon
4
CyT49
4
HUES8
4
bone tissue
4
caudate nucleus
4
cerebellum
4
chorionic villus
4
coronary artery
4
endocrine pancreas
4
frontal cortex
4
iPSC derived cell line
4
mesenchymal stem cell
4
omental fat pad
4
retina
4
right atrium auricular region
4
skeletal muscle tissue
4
testis
3
Ammon's horn
3
HCT116
3
HepG2
3
Peyer's patch
3
SK-N-SH
3
ascending aorta
3
breast epithelium
3
chorion membrane
3
endometrium adenocarcinoma
3
esophagus
3
hepatocyte(AFP)
3
immortal human breast epithelial cell line cell
3
layer of hippocampus
3
mesendoderm
3
pancreatic ductal cell
3
right cardiac atrium
3
substantia nigra
3
temporal lobe
3
tibial artery
3
trophoblast
3
upper lobe of left lung
3
uterus
3
vagina
2
22Rv1
2
A673
2
BJAB cell
2
Brodmann (1909) area 46
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
H7-hESC
2
HAP-1
2
HT-29
2
IMR-90
2
Jurkat
2
KARPAS-422 cell
2
LNCaP clone FGC
2
LoVo cell
2
MCF 10A cell
2
MM.1S
2
NAMALWA cell
2
OCI-LY7
2
PC-9
2
Panc1
2
SK-N-DZ
2
T47D
2
THP-1
2
U937
2
angular gyrus
2
bipolar neuron
2
cingulate gyrus
2
colonic mucosa
2
dorsolateral prefrontal cortex
2
duodenal mucosa
2
endodermal cell
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
iPS DF 19.11
2
left cardiac atrium
2
left renal cortex interstitium
2
left renal pelvis
2
limb
2
lower leg skin
2
lymphocyte of B lineage (iPSC)
2
mucosa of rectum
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
occipital lobe
2
parathyroid adenoma
2
prostate gland
2
putamen
2
right lobe of liver
2
right renal cortex interstitium
2
right renal pelvis
2
smooth muscle cell
2
stomach smooth muscle
2
thoracic aorta
2
tongue
2
trophoblast cell
2
urinary bladder
2
visceral abdominal adipose tissue
1
8988T
1
A172
1
ACC112
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08395 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
AG20443
1
B-lymphoblastoid cell line
1
BE(2)-C
1
BJ cell
1
C1 segment of cervical spinal cord
1
C4-2B
1
CMK
1
COLO829
1
CWRU1
1
Caco-2 cell
1
Caki2
1
DND-41
1
DOHH2
1
Daoy
1
EH
1
EL
1
ELF-1
1
ELR
1
ES-I3
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
G401
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM08714
1
GM10248
1
GM10266
1
GM12864
Organ
4
connective tissue
3
lung
Life stage
4
adult
1
embryonic
Date released
5
September, 2022
1
March, 2020
1
May, 2021
Software used
5
r
1
abc
1
nospecificsoft_customcode
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
biosample_type!
primary cell
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR334STP
released
Annotation file set
: Target gene predictions for BSS01871 upper lobe of left lung from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR505TRN
released
Annotation file set
: Target gene predictions for BSS01870 upper lobe of left lung from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR244BFG
released
Annotation file set
: Target gene predictions for BSS01869 upper lobe of left lung from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR607MNF
released
Annotation file set
: Target gene predictions for BSS01261 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR391CWH
released
Annotation file set
: Target gene predictions for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP