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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
5
accessible chromatin
5
target gene predictions
4
candidate regulatory elements
3
chromatin state
1
binding sites
1
caQTL
1
eQTL
1
gene expression
1
histone modifications
Annotation Category
5
Target gene links
1
Genetic variant effects
Annotation type Category
3
ATAC-seq
3
DNase-seq
2
ChIP-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
Available data
6
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
2
GRCh38
Organism
6
Homo sapiens
Biosample type
3
in vitro differentiated cells
3
primary cell
Biosample term
55
HeLa-S3
39
H1-hESC
23
K562
22
stomach
19
A549
19
CD14-positive monocyte
19
HFFc6
19
heart
18
brain
17
adrenal gland
17
lung
17
small intestine
16
muscle of arm
16
placenta
15
kidney
15
liver
14
common myeloid progenitor, CD34-positive
14
islet of Langerhans
14
large intestine
14
muscle of leg
13
left lung
13
muscle of back
13
thymus
11
adipose tissue
11
macrophage
11
right lung
10
B cell
10
hematopoietic multipotent progenitor cell
10
pericyte cell
10
pituitary stalk
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
left kidney
9
renal cortex interstitium
9
renal pelvis
9
spinal cord
8
GM12878
8
H9
8
endothelial cell
8
smooth muscle cell
8
spleen
7
CD8-positive, alpha-beta memory T cell
7
lymphocyte
7
monocyte
7
trophoblast cell
6
MCF-7
6
T cell
6
adipocyte
6
body of pancreas
6
dendritic cell
6
fibroblast
6
heart left ventricle
6
iPSC derived cell line
6
lymphoblastoid cell line
6
mononuclear cell
6
natural killer cell
6
olfactory receptor cell
6
ovary
6
regulatory T cell
6
sigmoid colon
6
subcutaneous adipose tissue
6
thyroid gland
6
transverse colon
5
CD8-positive, alpha-beta T cell
5
caudate nucleus
5
coronary artery
5
gastrocnemius medialis
5
keratinocyte
5
muscle of trunk
5
neutrophil
5
psoas muscle
5
skeletal muscle tissue
5
substantia nigra
5
tibial nerve
4
CyT49
4
HUES8
4
T-helper 1 cell
4
T-helper 17 cell
4
T-helper 2 cell
4
astrocyte
4
cerebellum
4
chorionic villus
4
colon epithelial cell
4
endocrine pancreas
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
frontal cortex
4
hepatocyte
4
layer of hippocampus
4
mammary gland epithelial cell
4
mesenchymal stem cell
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
neural progenitor cell
4
omental fat pad
4
pancreas
4
pancreatic delta cell
4
putamen
4
retina
4
right atrium auricular region
4
skin of body
4
testis
4
tibial artery
3
CD4-positive, alpha-beta T cell
3
HCT116
3
Peyer's patch
3
SK-N-SH
3
activated CD4-positive, alpha-beta T cell
3
ascending aorta
3
blood cell
3
breast epithelium
3
chorion membrane
3
endometrium adenocarcinoma
3
endothelial cell of umbilical vein
3
epithelial cell of prostate
3
esophagus
3
esophagus muscularis mucosa
3
foreskin fibroblast
3
heart right ventricle
3
immortal human breast epithelial cell line cell
3
luminal epithelial cell of mammary gland
3
naive T cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neurosphere
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic ductal cell
3
prostate gland
3
skeletal muscle myoblast
3
skin fibroblast
3
type B pancreatic cell
3
upper lobe of left lung
3
uterus
3
vagina
2
22Rv1
2
A673
2
Ammon's horn
2
BJAB cell
2
Brodmann (1909) area 46
2
CD4-positive helper T cell
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
H7-hESC
2
HAP-1
2
HT-29
2
HepG2
2
IMR-90
2
Jurkat
2
KARPAS-422 cell
2
LNCaP clone FGC
2
LoVo cell
2
MCF 10A cell
2
MM.1S
2
NAMALWA cell
2
OCI-LY7
2
PC-9
2
Panc1
2
SK-N-DZ
2
T-cell
2
T47D
2
THP-1
2
U937
2
activated CD8-positive, alpha-beta T cell
2
amygdala
2
angular gyrus
2
anterior cingulate cortex
2
aorta
2
articular chondrocyte
2
bipolar neuron
2
blood
2
blood vessel smooth muscle cell
2
bronchial epithelial cell
2
cardiac muscle cell
2
cartilage tissue
2
cingulate gyrus
2
colonic mucosa
2
cortical cell of adrenal gland
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
duodenal mucosa
2
endodermal cell
2
enteric smooth muscle cell
2
erythroblast
2
esophagus squamous epithelium
2
eye
2
fat cell
2
fibroblast of breast
2
gabaergic neuron
2
glutamatergic neuron
2
hypothalamus
2
iPS DF 19.11
2
kidney tubule cell
2
left renal cortex interstitium
2
left renal pelvis
2
limb
Organ
4
connective tissue
Life stage
1
adult
1
embryonic
Date released
2
November, 2021
2
September, 2022
1
February, 2024
March, 2020
1
May, 2021
Software used
3
abc
2
r
1
qTLtools
Lab
2
AMP-T2D consortium
2
Bing Ren, UCSD
1
Jesse Engreitz, Stanford University
1
Stephen Parker, UMich
Project
4
AMP
2
ENCODE
RFA
3
AMP
2
ENCODE3
1
AMP2
month_released!
March, 2020
Showing 6 of 6 results
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Download
FileSet
DSR607MNF
released
Annotation file set
: Target gene predictions for BSS01261 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR391CWH
released
Annotation file set
: Target gene predictions for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR355QJQ
released
Annotation file set
: Target gene predictions of Vascular Smooth Muscle 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR962GMB
released
Annotation file set
: Target gene predictions of Vascular Smooth Muscle 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR033HJN
released
Annotation file set
: Expression QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP