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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
3
chromatin state
2
candidate regulatory elements
2
target gene predictions
1
binding sites
1
caQTL
1
eQTL
1
histone modifications
Annotation Category
2
Target gene links
1
cis-regulatory elements
Annotation type Category
1
ATAC-seq
1
ChIP-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
2
in vitro differentiated cells
1
stem cell
Biosample term
53
HeLa-S3
40
H1-hESC
19
HFFc6
19
K562
15
CD14-positive monocyte
10
pituitary stalk
9
GM12878
9
breast cancer cell
9
endothelial cell
9
pericyte cell
7
H9
7
fibroblast cell line
7
keratinocyte
7
melanoma
6
dendritic cell
6
endothelial cell of hepatic sinusoid
6
fibroblast
6
lymphocyte
6
olfactory receptor cell
6
smooth muscle cell
5
CD8-positive, alpha-beta T cell
5
HUES8
5
HepG2
5
adipocyte
5
foreskin fibroblast
5
iPSC derived cell line
5
macrophage
5
mammary epithelial cell
5
neural progenitor cell
5
pancreatic ductal cell
5
prostate cancer cell line
4
CyT49
4
Jurkat
4
MCF-7
4
cardiac muscle cell
4
embryonic stem cell
4
endothelial cell of umbilical vein
4
erythroblast
4
glioblastoma multiforme cancer stem cell
4
liver
4
monocyte
4
neuroblastoma cell
4
neuronal stem cell
4
osteoblast
4
pancreas
4
pancreatic delta cell
4
psoas muscle
4
thymus
3
A549
3
BJAB cell
3
CD4-positive, alpha-beta T cell
3
GM18505
3
GM19099
3
GM19193
3
GM19238
3
GM19239
3
GM19240
3
HCT-116 cell
3
IMR-90
3
MCF 10A cell
3
T-cell acute lymphoblastic leukemia
3
THP-1
3
Tumor-derived cell line
3
U937
3
acute myeloid leukemia
3
adipose tissue
3
adrenal gland
3
astrocyte
3
cardiomyocytes (cardiac muscle cell)
3
colon epithelial cell
3
dermal fibroblast
3
diffuse intrinsic pontine glioma
3
fibroblast of lung
3
hepatocyte
3
islet of Langerhans
3
liposarcoma
3
mammary gland epithelial cell
3
mesenchymal stem cell
3
mesendoderm
3
myotube
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
skeletal muscle myoblast
3
spinal cord
3
spleen
3
synovial sarcoma cell
3
triple-negative breast cancer
3
type B pancreatic cell
2
AG04449 cell
2
AG04450 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
B cell
2
B-lymphoblastoid cell line
2
BE(2)-C
2
BJ cell
2
Burkitt's lymphoma
2
CD4-positive helper T cell
2
COLO-320 cell
2
Caco-2 cell
2
DND-41 cell
2
ECC-1
2
EndoC_BH1
2
Ewing sarcoma
2
Fallopian Tube Carcinoma
2
GM06990
2
GM08714
2
GM10847
2
GM12801
2
GM12864
2
GM12865
2
GM12872
2
GM12873
2
GM12874
2
GM12875
2
GM12891
2
GM12892
2
GM15510
2
GM18526
2
GM18951
2
HAC cell
2
HAP-1
2
HBMEC cell
2
HCT116
2
HEK293
2
HEK293-T-REx cell
2
HL-60
2
HS-SY-2 cell
2
HT-29
2
KARPAS-422 cell
2
LNCAP
2
LoVo cell
2
MDA-MB-231 cell
2
MM.1S
2
Mantle cell lymphoma
2
NCCIT cell
2
NHEK
2
NT2-D1 cell
2
Normal Human Astrocytes
2
OCI-LY7
2
PANC-1 cell
2
PC-9
2
PFSK-1 cell
2
RS4-11 cell
2
Raji cell
2
Rh-4 cell
2
SAEC
2
SH-SY5Y cell
2
SK-MEL-5 cell
2
SK-N-MC
2
SK-N-SH
2
SK-N-SH_RA
2
SUM-185PE cell
2
T-47D cell
2
T-cell
2
T-lymphocyte
2
Th1 cell
2
U-87 MG
2
U2OS
2
WERI-Rb-1
2
WI-38 cell
2
activated CD4-positive, alpha-beta T cell
2
adult acute myeloid leukemia
2
aorta
2
aortic adventitial fibroblast
2
blood vessel smooth muscle cell
2
bronchial epithelial cell
2
choroid plexus epithelial cell
2
chronic lymphocytic leukemia cell
2
chronic myeloid leukemia cell
2
colon adenocarcinoma
2
cortical cell of adrenal gland
2
diffuse large B-cell lymphoma
2
enteric smooth muscle cell
2
epithelial cell of prostate
2
erythroid progenitor cell
2
esophageal epithelial cell
2
esophageal squamous cell carcinoma
2
fibroblast of cardiac tissue
2
fibroblast of dermis
2
fibroblast of mammary gland
2
fibroblast of pulmonary artery
2
fibroblast of villous mesenchyme
2
gabaergic neuron
2
gastric cancer cell
2
glioblastoma cell
2
glutamatergic neuron
2
heart
2
heart left ventricle
2
heart right ventricle
2
immortal neural cell line cell
2
leukemic stem cell
2
luminal epithelial cell of mammary gland
2
lung fibroblast cell line
2
lymphoblastoid cell line
2
lymphocyte of B lineage (iPSC)
2
mast cell
Organ
3
connective tissue
Date released
1
February, 2021
1
March, 2020
1
May, 2021
Software used
r
1
abc
1
macs
1
nospecificsoft_customcode
Lab
2
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
3
AMP
RFA
3
AMP
software_used.software.name!
r
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR959CJP
released
Annotation file set
: Binding sites annotation for Others Mesenchymal_stem_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP