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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
2
target gene predictions
1
caQTL
1
eQTL
gene expression
Annotation Category
3
cis-regulatory elements
2
Genetic variant effects
2
Target gene links
Annotation type Category
ChIP-seq
8
DNase-seq
3
snATAC-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
1
pCHi-C
Available data
7
bed bed3+
1
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
4
primary cell
2
in vitro differentiated cells
1
stem cell
Biosample term
52
HeLa-S3
39
H1-hESC
28
endothelial cell
28
fibroblast
28
islet of Langerhans
28
macrophage
27
monocyte
25
retina
20
pigmented layer of retina
19
HFFc6
19
pericyte cell
19
smooth muscle cell
18
K562
16
liver
15
CD14-positive monocyte
15
pancreatic beta cell
15
pancreatic ductal cell
14
pancreatic acinar cell
14
pancreatic alpha cell
13
EndoC_BH1
13
excitatory neuron
13
pancreatic delta cell
13
subcutaneous adipose tissue
12
coronary artery
12
hepatocyte
12
kidney
11
T cell
11
adipocyte
11
astrocyte
11
neural progenitor cell
10
B cell
10
CD8-positive, alpha-beta T cell
10
pancreas
10
pituitary stalk
10
right atrium auricular region
10
tibial artery
10
tibial nerve
9
adipose tissue
9
putamen
9
retinal pigment epithelial cell
8
GM12878
8
caudate nucleus
8
frontal cortex
8
glutamatergic neuron
8
heart
8
heart left ventricle
8
induced pluripotent stem cell
8
pancreatic stellate cell
8
regulatory T cell
7
Ammon's horn
7
H9
7
embryonic stem cell
7
erythroblast
7
lymphoblastoid cell line
7
mesenchymal stem cell
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
natural killer cell
7
omental fat pad
7
skeletal muscle fiber
7
type II pneumocyte
6
CD4-positive helper T cell
6
SGBS preadipocytes
6
ascending aorta
6
body of pancreas
6
cerebellum
6
colon epithelial cell
6
cortical cell of adrenal gland
6
dendritic cell
6
endothelial cell of hepatic sinusoid
6
enterocyte
6
iPSC derived cell line
6
keratinocyte
6
lymphocyte
6
memory B cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
olfactory receptor cell
6
osteoblast
6
skeletal muscle satellite cell
6
stomach
6
substantia nigra
6
type I muscle cell
6
type II muscle cell
5
cardiac fibroblast
5
HUES8
5
adrenal gland
5
amygdala
5
anterior cingulate cortex
5
basal cell
5
brain
5
cardiac muscle cell
5
cerebellum (Hemisphere)
5
chondrocyte
5
endothelial cell of umbilical vein
5
fibroblast of cardiac tissue
5
gabaergic neuron
5
hypothalamus
5
inhibitory neuron
5
naive B cell
5
neutrophil
5
nucleus accumbens
5
psoas muscle
5
spleen
4
C1 segment of cervical spinal cord
4
CD4-positive, alpha-beta T cell
4
CyT49
4
HepG2
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
T-helper 1 cell
4
activated CD4-positive, alpha-beta T cell
4
blood vessel smooth muscle cell
4
cardiomyocytes (cardiac muscle cell)
4
cartilage tissue
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
gastrocnemius medialis(Muscle - Skeletal)
4
glomerular visceral epithelial cell
4
heart right ventricle
4
hepatic stellate cell
4
left ventricle myocardium
4
luminal epithelial cell of mammary gland
4
mammary gland epithelial cell
4
megakaryocyte
4
mesothelial cell
4
myofibroblast cell
4
ovary
4
pancreatic A cell
4
pancreatic endothelial cell
4
pancreatic polypeptide-secreting cell
4
right lobe of liver
4
skeletal muscle myoblast
4
skin fibroblast
4
small intestine
4
smooth muscle cell of the esophagus
4
spinal cord
4
thymus
4
type B pancreatic cell
4
type I pneumocyte
3
Jurkat
3
Schwann cell
3
T follicular helper cell
3
T-helper 17 cell
3
T-helper 2 cell
3
U937
3
activated CD8-positive, alpha-beta T cell
3
blood cell
3
brain pericyte
3
choroid plexus epithelial cell
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
globus pallidus
3
glomerular endothelial cell
3
goblet cell
3
kidney glomerular epithelial cell
3
mast cell
3
medulla oblongata
3
mesendoderm
3
microglial cell
3
midbrain
3
muscle of leg
3
naive t cell
3
occipital lobe
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic MUC5B+ductal cell
3
pancreatic alpha+beta cell
3
pancreatic cycling alpha cell
3
pancreatic gamma+epsilon cell
3
pancreatic macrophage cell
3
pancreatic mast cell
3
pancreatic quiescent stellate cell
3
parietal cell
3
peptic cell
3
placenta
3
plasma cell
3
plasmacytoid dendritic cell
3
pons
3
renal cortical epithelial cell
3
renal pelvis
3
schwann cell
3
sigmoid colon
3
skin of body
3
smooth muscle cell of the coronary artery
3
superior temporal gyrus
3
thyroid follicular cell
3
thyroid gland
3
transverse colon
3
trophoblast cell
3
uterus
2
hindlimb muscle
2
muscle of leg
2
A549
2
Adaptive / Maladaptive / Repairing Fibroblast
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
2
Afferent / Efferent Arteriole Endothelial Cell
2
B Cell
Organ
7
connective tissue
Life stage
1
unknown
Date released
2
February, 2024
1
June, 2020
1
March, 2020
1
May, 2021
1
May, 2022
1
October, 2022
Software used
3
macs
1
abc
1
eigenmt
1
nospecificsoft_customcode
1
qTLtools
1
rasqual
Lab
3
AMP-T2D consortium
3
Stephen Parker, UMich
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
4
AMP
3
AMP2
annotation_type_category!
ChIP-seq
annotation_type!
gene expression
Showing 7 of 7 results
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Download
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR033HJN
released
Annotation file set
: Expression QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR497YXK
released
Annotation file set
: Accessible chromatin annotation for Others Mesenchymal stem cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP