Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
caQTL
1
eQTL
1
target gene predictions
Annotation Category
2
Genetic variant effects
2
cis-regulatory elements
1
Target gene links
Annotation type Category
11
ChIP-seq
8
DNase-seq
3
snATAC-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
1
pCHi-C
1
snRNA-seq
Available data
5
bed bed3+
1
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
4
primary cell
1
in vitro differentiated cells
Biosample term
30
islet of Langerhans
25
macrophage
24
fibroblast
23
endothelial cell
23
monocyte
17
induced pluripotent stem cell
15
CD14-positive monocyte
15
subcutaneous adipose tissue
14
smooth muscle cell
13
excitatory neuron
13
hepatocyte
11
EndoC_BH1
11
cardiomyocytes
11
pancreatic alpha cell
11
regulatory T cell
10
T cell
10
pancreatic beta cell
10
pericyte cell
10
pituitary stalk
9
H1-hESC
9
astrocyte
9
pancreatic delta cell
8
T-helper 1 cell
8
adipocyte
8
kidney
8
pancreatic acinar cell
7
B cell
7
CD8-positive, alpha-beta T cell
7
T-helper 17 cell
7
body of pancreas
7
cerebellum
7
coronary artery
7
frontal cortex
7
liver
7
neural progenitor cell
7
omental fat pad
7
pancreatic ductal cell
7
putamen
7
right atrium auricular region
7
skeletal muscle fiber
7
substantia nigra
7
tibial nerve
6
adipose tissue
6
amygdala
6
anterior cingulate cortex
6
caudate nucleus
6
dendritic cell
6
endothelial cell of hepatic sinusoid
6
enterocyte
6
erythroblast
6
hypothalamus
6
lymphoblastoid cell line
6
memory B cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
nucleus accumbens
6
skeletal muscle satellite cell
6
tibial artery
5
Ammon's horn
5
C1 segment of cervical spinal cord
5
ascending aorta
5
cerebellum (Hemisphere)
5
gastrocnemius medialis(Muscle - Skeletal)
5
inhibitory neuron
5
left ventricle myocardium
5
mesenchymal stem cell
5
natural killer cell
5
right lobe of liver
5
type I muscle cell
5
type II muscle cell
5
type II pneumocyte
4
T-helper 2 cell
4
adrenal gland
4
basal cell
4
cardiac precursors (cardiac muscle cell)
4
cortical cell of adrenal gland
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
keratinocyte
4
myofibroblast cell
4
pancreatic polypeptide-secreting cell
4
smooth muscle cell of the coronary artery
4
stomach
4
visceral abdominal adipose tissue
3
T follicular helper cell
3
activated CD4-positive, alpha-beta T cell
3
activated CD8-positive, alpha-beta T cell
3
blood cell
3
bone tissue
3
brain
3
central memory CD8-positive, alpha-beta T cell
3
colon epithelial cell
3
effector memory CD8-positive, alpha-beta T cell
3
endothelial cell of lymphatic vessel
3
goblet cell
3
megakaryocyte
3
mesangial cell
3
mesothelial cell
3
naive B cel
3
naive B cell
3
neutrophil
3
osteoblast
3
ovary
3
pancreatic stellate cell
3
skeletal muscle tissue
3
skin of body
3
spleen
3
type I pneumocyte
3
uterus
2
BJAB cell
2
CD4-positive helper T cell
2
Jurkat
2
MCF 10A cell
2
Muller cell
2
Schwann cell
2
T-cell
2
THP-1
2
U937
2
articular chondrocyte
2
blood
2
blood vessel smooth muscle cell
2
capillary endothelial cell
2
cardiac muscle cell
2
cardiomyocytes (cardiac muscle cell)
2
cartilage tissue
2
ciliated cell
2
club cell
2
conventional dendritic cell
2
dorsolateral prefrontal cortex
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
endocardial cell
2
enteric neuron
2
enteric smooth muscle cell
2
epithelial cell of esophagus
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of cardiac tissue
2
gabaergic neuron
2
gamma-delta T cell
2
glial cell
2
glutamatergic neuron
2
heart
2
heart left ventricle
2
iPSC derived cell line
2
leukocyte
2
luminal epithelial cell of mammary gland
2
lung
2
mammary gland epithelial cell
2
mast cell
2
mature natural killer cell
2
memory T cell
2
memory regulatory T cell
2
metanephros
2
microglial cell
2
minor salivary gland
2
muscle
2
natural killer cell mediated cytotoxicity
2
non-classical monocyte
2
oligodendrocyte precursor cell
2
pancreas
2
parietal cell
2
peptic cell
2
placenta
2
plasmacytoid dendritic cell
2
retina
2
schwann cell
2
skeletal muscle myoblast
2
small intestine
2
smooth muscle cell of the esophagus
2
spinal cord
2
stellate neuron
2
testis
2
thyroid follicular cell
2
thyroid gland
2
transverse colon
2
trophoblast cell
2
vagina
2
vascular associated smooth muscle cell
1
A549
1
A673
1
B cell, CD19-positive
1
B-1a B cell
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD4-positive, alpha-beta T cell
1
CD56-positive, CD161-positive immature natural killer cell
1
GM12878
1
H7-hESC
1
H9
1
HAP-1
1
HCT-116 cell
1
HT-29
1
HeLa-S3
1
HepG2
1
IMR-90
1
K562
1
KARPAS-422 cell
1
LNCAP
1
Leydig cell
1
LoVo cell
1
MCF-7
Organ
5
connective tissue
Life stage
1
unknown
Date released
2
February, 2024
1
May, 2021
1
May, 2022
1
October, 2022
Software used
2
macs
1
abc
1
eigenmt
1
qTLtools
1
rasqual
Lab
3
Stephen Parker, UMich
1
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
3
AMP2
2
AMP
Showing 5 of 5 results
table-tab-icon
matrix-icon
Download
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR033HJN
released
Annotation file set
: Expression QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP