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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
caQTL
Annotation Category
2
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
8
ChIP-seq
8
DNase-seq
3
snATAC-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
1
pCHi-C
1
snRNA-seq
Available data
3
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
8
pancreatic alpha cell
8
pancreatic beta cell
8
pancreatic delta cell
7
endothelial cell
6
fibroblast
6
macrophage
5
smooth muscle cell
4
myofibroblast cell
4
pancreatic acinar cell
4
pancreatic ductal cell
4
pancreatic polypeptide-secreting cell
4
skeletal muscle fiber
3
T cell
3
basal cell
3
enterocyte
3
mesenchymal stem cell
3
natural killer cell
3
pancreatic stellate cell
3
type I muscle cell
3
type II muscle cell
2
CD8-positive, alpha-beta T cell
2
Schwann cell
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
adipocyte
2
capillary endothelial cell
2
conventional dendritic cell
2
epithelial cell of esophagus
2
extracellular matrix secreting cell
2
goblet cell
2
leukocyte
2
megakaryocyte
2
memory B cell
2
monocyte
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell mediated cytotoxicity
2
non-classical monocyte
2
plasmacytoid dendritic cell
2
regulatory T cell
2
skeletal muscle satellite cell
2
stellate neuron
2
type II pneumocyte
2
vascular associated smooth muscle cell
1
B cell
1
Satellite Cells, Skeletal Muscle
1
bronchial goblet cell
1
cardiac muscle cell
1
cell
1
ciliated cell
1
club cell
1
cortical cell of adrenal gland
1
endothelial cell of artery
1
endothelial cell of lymphatic vessel
1
erythrocyte
1
glial cell
1
granulosa cell
1
hepatocyte
1
keratinocyte
1
kidney distal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mammary gland epithelial cell
1
mast cell
1
mesothelial cell
1
neural cell
1
neuroendocrine cell
1
pancreatic endocrine cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
parietal cell
1
peptic cell
1
pericyte cell
1
proximal tubule cells with injury markers
1
thyroid follicular cell
1
type I pneumocyte
Organ
3
connective tissue
Life stage
1
unknown
Date released
1
February, 2024
1
May, 2022
1
October, 2022
Software used
2
macs
1
eigenmt
1
rasqual
Lab
2
Stephen Parker, UMich
1
AMP-T2D consortium
Project
3
AMP
RFA
2
AMP2
1
AMP
assembly!
GRCh38
Showing 3 of 3 results
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Download
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP