Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
3
snATAC-seq
Available data
3
bed bed3+
2
bigWig
File set status
3
released
Genome assembly (visualization)
13
hg19
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
7
induced pluripotent stem cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
4
cartilage tissue
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic delta cell
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
macrophage
3
natural killer cell
2
CD8-positive, alpha-beta T cell
2
EndoC_BH1
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
articular chondrocyte
2
capillary endothelial cell
2
conventional dendritic cell
2
endothelial cell
2
extracellular matrix secreting cell
2
megakaryocyte
2
memory B cell
2
monocyte
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell mediated cytotoxicity
2
non-classical monocyte
2
pancreatic acinar cell
2
pancreatic ductal cell
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
plasmacytoid dendritic cell
2
regulatory T cell
2
stellate neuron
1
B cell
1
T cell
1
basal cell
1
ciliated cell
1
club cell
1
endothelial cell of artery
1
endothelial cell of lymphatic vessel
1
erythrocyte
1
myofibroblast cell
1
neuroendocrine cell
1
pericyte cell
1
purified protein and synthetic DNA oligo binding assay
1
synovial joint
1
type I pneumocyte
1
type II pneumocyte
Date released
2
January, 2021
1
April, 2020
Software used
1
cicero
1
macs
Lab
2
Kyle Gaulton, UCSD
1
Xin Sun, UCSD
Project
AMP
2
T1D
1
LungMap
RFA
2
T1D
1
LungMap2
award.project!
AMP
assembly!
GRCh38
Showing 3 of 3 results
table-tab-icon
matrix-icon
Download
FileSet
DSR101TON
released
Annotation file set
: ATAC-seq peaks in macrophages from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR104LZJ
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of pancreatic_macrophage
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR097XAH
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of pancreatic_macrophage
Lab:
Kyle Gaulton, UCSD
Project:
T1D