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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
target gene predictions
Annotation Category
2
Target gene links
2
cis-regulatory elements
Annotation type Category
ChIP-seq
8
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
1
snATAC-seq
Available data
4
bed bed3+
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
2
in vitro differentiated cells
1
primary cell
1
stem cell
Biosample term
52
HeLa-S3
47
H1-hESC
42
monocyte
39
islet of Langerhans
29
endothelial cell
28
macrophage
26
fibroblast
26
retina
21
EndoC_BH1
21
pancreatic ductal cell
20
pigmented layer of retina
19
HFFc6
19
pericyte cell
18
K562
18
neural progenitor cell
18
pancreatic beta cell
18
subcutaneous adipose tissue
17
epithelial cell of proximal tubule
17
induced pluripotent stem cell
17
liver
17
pancreatic acinar cell
17
pancreatic alpha cell
16
glomerular endothelial cell
16
pancreatic delta cell
16
smooth muscle cell
15
CD14-positive monocyte
15
hepatocyte
15
regulatory T cell
14
excitatory neuron
13
coronary artery
12
B cell
12
CD8-positive, alpha-beta T cell
12
adipose tissue
12
astrocyte
12
right atrium auricular region
12
tibial nerve
11
T-helper 1 cell
11
adipocyte
11
cardiomyocytes
11
heart
11
tibial artery
10
T cell
10
frontal cortex
10
pancreas
10
pancreatic stellate cell
10
pituitary stalk
10
putamen
9
T-helper 17 cell
9
caudate nucleus
9
extended pluripotent stem (EPS) cells
9
heart left ventricle
9
memory B cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
9
omental fat pad
9
progenitor cell of endocrine pancreas
9
retinal pigment epithelial cell
8
Ammon's horn
8
GM12878
8
body of pancreas
8
cardiomyocytes (cardiac muscle cell)
8
cerebellum
8
glomerular visceral epithelial cell
8
glutamatergic neuron
8
naive thymus-derived CD4-positive, alpha-beta T cell
8
natural killer cell
8
osteoblast
7
H9
7
ascending aorta
7
embryonic stem cell
7
erythroblast
7
kidney loop of Henle thin ascending limb epithelial cell
7
lymphoblastoid cell line
7
mesangial cell
7
stomach
7
substantia nigra
6
CD4-positive helper T cell
6
SGBS preadipocytes
6
T-helper 2 cell
6
adrenal gland
6
amygdala
6
anterior cingulate cortex
6
brain
6
cardiac precursors (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
colon epithelial cell
6
cortical cell of adrenal gland
6
dendritic cell
6
enterocyte
6
gamma-delta T cell
6
hypothalamus
6
iPSC derived cell line
6
keratinocyte
6
kidney interstitial cell
6
lymphocyte
6
naive B cell
6
nucleus accumbens
6
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
6
skeletal muscle satellite cell
6
spleen
6
type II pneumocyte
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
HUES8
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
basal cell
5
cardiac muscle cell
5
central memory CD8-positive, alpha-beta T cell
5
chondrocyte
5
effector memory CD8-positive, alpha-beta T cell
5
endothelial cell of umbilical vein
5
fibroblast of cardiac tissue
5
gabaergic neuron
5
gastrocnemius medialis(Muscle - Skeletal)
5
heart right ventricle
5
hepatic stellate cell
5
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
left ventricle myocardium
5
neutrophil
5
ovary
5
pancreatic endothelial cell
5
psoas muscle
5
right lobe of liver
5
skeletal muscle fiber
5
skeletal muscle myoblast
5
smooth muscle cell of the coronary artery
4
CD4-positive, alpha-beta T cell
4
CyT49
4
HepG2
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
Schwann cell
4
activated CD4-positive, alpha-beta T cell
4
adult endothelial progenitor cell
4
blood vessel smooth muscle cell
4
bone tissue
4
cartilage tissue
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
kidney
4
kidney glomerular epithelial cell
Organ
4
connective tissue
Life stage
1
unknown
Date released
1
June, 2020
1
March, 2020
1
May, 2021
1
May, 2022
Software used
2
macs
1
abc
1
nospecificsoft_customcode
Lab
3
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
4
AMP
RFA
4
AMP
AMP2
award.rfa!
AMP2
annotation_type_category!
ChIP-seq
Showing 4 of 4 results
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Download
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR497YXK
released
Annotation file set
: Accessible chromatin annotation for Others Mesenchymal stem cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP