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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
binding sites
1
histone modifications
Annotation Category
4
cis-regulatory elements
Annotation type Category
2
ChIP-seq
1
DNase-seq
1
snATAC-seq
Available data
5
bed bed3+
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
3
in vitro differentiated cells
1
primary cell
Biosample term
91
monocyte
31
CD8-positive, alpha-beta T cell
30
neural progenitor cell
20
breast cancer cell
12
neuroblastoma cell
11
embryonic stem cell
11
gastric cancer cell
10
Rhabdomyosarcoma
10
diffuse intrinsic pontine glioma
10
endothelial cell of hepatic sinusoid
9
EndoC_BH1
9
liposarcoma
9
retina
8
T-cell acute lymphoblastic leukemia
8
esophageal adenocarcinoma
8
fibroblast cell line
8
neuroblastoma cell line
7
B-lymphoblastoid cell line
7
HepG2
7
acute myeloid leukemia
7
chondrocyte
7
hESC cell
7
keratinocyte
7
mammary epithelial cell
7
melanoma
7
neuronal stem cell
7
retinal pigment epithelial cell
6
Chondroid Chordoma
6
Rh-4 cell
6
adipocyte
6
glioblastoma multiforme cancer stem cell
6
hepatocyte
6
lymphoblastoid cell line
6
osteoblast
6
osteosarcoma
6
pigmented layer of retina
6
prostate cancer cell line
6
squamous cell lung carcinoma
5
Ewing sarcoma
5
Jurkat
5
MCF-7
5
RS4-11 cell
5
Th1 cell
5
brain
5
bronchial epithelial cell
5
dermal fibroblast
5
diffuse large B-cell lymphoma
5
endothelial cell
5
esophageal squamous cell carcinoma
5
fibroblast
5
fibroblast of cardiac tissue
5
foreskin fibroblast
5
liver
5
melanoma cell
5
pancreatic ductal cell
5
synovial sarcoma cell
5
triple-negative breast cancer
4
B cell
4
B-lymphocyte
4
COLO205
4
HS-SY-2 cell
4
Mantle cell lymphoma
4
SGBS preadipocytes
4
Tumor-derived cell line
4
acute myeloid leukemia cell
4
adipose-derived stem cell
4
cardiac muscle cell
4
colon adenocarcinoma
4
erythroid cell
4
erythroid progenitor cell
4
glioblastoma cell
4
glioma cell
4
glutamatergic neuron
4
heart
4
hepatic stellate cell
4
immortal neural cell line cell
4
islet of Langerhans
4
kidney
4
leukemic stem cell
4
lung fibroblast cell line
4
macrophage
4
mammary gland epithelial cell
4
mesenchymal stem cell
4
metastatic melanoma
4
pancreas
4
pancreatic cell line
4
placenta
4
preadipocyte
4
prostate gland
4
regulatory T cell
4
rhabdomyosarcoma cell
4
skin fibroblast
4
spinal cord
4
stomach
4
tracheal epithelial cell
3
786-O cell
3
A-673 cell
3
A549
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
BE(2)-C
3
BJ cell
3
CD1c-positive myeloid dendritic cell
3
CMK
3
COLO-320 cell
3
Caco-2 cell
3
D341 Med cell
3
G-401 cell
3
GM06990
3
GM12864
3
GM12865
3
GM12878
3
GM19240
3
GM23248
3
H1-hESC
3
HAC cell
3
HAP-1
3
HBMEC cell
3
HCT-116 cell
3
HEK293
3
HL-60
3
HT-29
3
HeLa cell
3
HuH-7
3
IMR-90
3
Ishikawa
3
K562
3
KARPAS-422 cell
3
Kasumi-1
3
LHCN-M2
3
LNCAP
3
LoVo cell
3
MDA-MB-231 cell
3
MG63
3
MM.1S
3
MOLM-13 cell
3
Myoblasts
3
NAMALWA cell
3
NB-4 cell
3
NCCIT cell
3
NHBE cell
3
NHDF cell
3
NHEK
3
NT2-D1 cell
3
Normal Human Astrocytes
3
OCI-AML3
3
OCI-LY7
3
PA-TU-8988T cell
3
PANC-1 cell
3
PC-3
3
PC-9
3
REH cell
3
RKO
3
RPMI8226
3
RWPE1
3
SAEC
3
SK-N-MC
3
SK-N-SH_RA
3
SW480
3
Saos-2 cell
3
T cell
3
T-47D cell
3
Th17 cell
3
U-266 cell
3
U-87 MG
3
U2OS
3
U937
3
WERI-Rb-1
3
WI-38 cell
3
ZR-75-1 cell
3
aortic adventitial fibroblast
3
bone marrow cell
3
cardiac myocyte cell derived cell line
3
choroid plexus epithelial cell
3
chronic lymphocytic leukemia cell
3
colon cancer cell line
3
cortex of kidney
3
epithelial cell of prostate
3
epithelial ovarian cancer cell
3
esophageal epithelial cell
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
foreskin keratinocyte
3
foreskin melanocyte
3
glial cell
3
hESC H9
3
hematopoietic cell
3
hematopoietic multipotent progenitor cell
3
iPS DF 4.7 Cell Line
3
lymphoblast
3
mesendoderm
3
midbrain
3
mononuclear cell of bone marrow
3
multiple myeloma cell line
3
natural killer cell
3
neoplastic cell
Organ
4
connective tissue
Date released
2
February, 2021
1
February, 2024
1
June, 2020
Software used
5
r
4
macs
3
chromhmm
2
encode-ccres
1
abc
1
deeptools
1
eigenmt
1
nospecificsoft_customcode
1
qTLtools
1
rasqual
1
samtools
1
umitools
Lab
3
AMP-T2D consortium
1
Stephen Parker, UMich
Project
4
AMP
RFA
3
AMP
1
AMP2
biosample_term_name!
aorta
files.file_type!
bigWig
Showing 4 of 4 results
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Download
FileSet
DSR337GCY
released
Annotation file set
: Histone modifications annotation for Others Mesenchymal_stem_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR959CJP
released
Annotation file set
: Binding sites annotation for Others Mesenchymal_stem_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR497YXK
released
Annotation file set
: Accessible chromatin annotation for Others Mesenchymal stem cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP