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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
candidate regulatory elements
1
chromatin state
1
gene expression
1
target gene predictions
Annotation Category
4
cis-regulatory elements
Genetic variant effects
1
Gene expression levels
1
Target gene links
Annotation type Category
2
ChIP-seq
2
snATAC-seq
1
DNase-seq
1
pCHi-C
1
snRNA-seq
Available data
4
bed bed3+
1
bed bed9
1
bigBed bed9
1
bigWig
File set status
6
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
in vitro differentiated cells
5
primary cell
1
stem cell
Biosample term
122
monocyte
87
heart
85
stomach
78
kidney
69
brain
67
lung
66
muscle of arm
63
HeLa-S3
62
small intestine
61
adrenal gland
60
A549
58
muscle of leg
58
placenta
56
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
H1-hESC
52
left lung
50
CD8-positive, alpha-beta T cell
47
thymus
45
right lung
43
B cell
41
right kidney
40
liver
39
K562
39
renal cortex interstitium
39
renal pelvis
37
retina
36
endothelial cell
36
left kidney
32
CD4-positive, alpha-beta memory T cell
32
spinal cord
32
spleen
31
CD14-positive monocyte
31
heart left ventricle
31
hepatocyte
25
adipose tissue
25
regulatory T cell
24
pericyte cell
23
MCF-7
23
fibroblast
23
islet of Langerhans
23
macrophage
23
natural killer cell
23
sigmoid colon
22
CD8-positive, alpha-beta memory T cell
22
T-helper 1 cell
21
EndoC_BH1
21
epithelial cell of proximal tubule
20
T-helper 17 cell
20
glomerular endothelial cell
20
pigmented layer of retina
20
psoas muscle
19
HFFc6
19
body of pancreas
19
foreskin keratinocyte
19
mononuclear cell
19
ovary
18
T cell
18
gastrocnemius medialis
18
heart right ventricle
18
pancreas
18
pancreatic ductal cell
18
tibial nerve
18
trophoblast cell
astrocyte
17
endothelial cell of umbilical vein
17
muscle of trunk
17
pancreatic beta cell
17
smooth muscle cell
17
thyroid gland
17
transverse colon
16
H9
16
T-helper 2 cell
16
caudate nucleus
16
chorionic villus
16
pancreatic acinar cell
16
pancreatic alpha cell
15
CD4-positive, alpha-beta T cell
15
fibroblast of cardiac tissue
15
foreskin fibroblast
15
keratinocyte
15
testis
14
GM12878
14
endocrine pancreas
14
layer of hippocampus
14
osteoblast
14
pancreatic delta cell
14
skeletal muscle tissue
14
upper lobe of left lung
13
HepG2
13
Peyer's patch
13
aorta
13
coronary artery
13
fibroblast of lung
13
neurosphere
13
skeletal muscle satellite cell
13
temporal lobe
12
tibial artery
11
breast cancer cell
11
breast epithelium
11
excitatory neuron
11
fibroblast of dermis
11
glomerular visceral epithelial cell
11
left renal cortex interstitium
11
omental fat pad
11
right atrium auricular region
11
skeletal muscle myoblast
10
bronchial epithelial cell
10
epithelial cell of prostate
10
esophagus squamous epithelium
10
kidney tubule cell
10
left cardiac atrium
10
lymphocyte
10
mammary gland epithelial cell
10
pancreatic stellate cell
10
right renal pelvis
10
subcutaneous adipose tissue
10
substantia nigra
9
22Rv1
9
SK-N-DZ
9
ascending aorta
9
cerebellum
9
colonic mucosa
9
endothelial cell of hepatic sinusoid
9
left renal pelvis
9
neutrophil
9
parathyroid adenoma
9
prostate gland
9
right renal cortex interstitium
9
thoracic aorta
9
tongue
9
trophoblast
8
Ammon's horn
8
Rhabdomyosarcoma
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
erythroblast
8
esophagus
8
esophagus muscularis mucosa
8
gastric cancer cell
8
hepatic stellate cell
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mammary epithelial cell
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
vagina
7
B-lymphoblastoid cell line
7
HAP-1
7
NAMALWA cell
7
SK-N-SH
7
T47D
7
angular gyrus
7
chorion membrane
7
endometrium adenocarcinoma
7
eye
7
frontal cortex
7
memory B cell
7
neuroblastoma cell
7
retinal pigment epithelial cell
7
skin fibroblast
7
stomach smooth muscle
6
Brodmann (1909) area 46
6
CD1c-positive myeloid dendritic cell
6
CMK
6
GM06990
6
GM12864
6
GM12865
6
GM18507
6
GM19240
6
GM23248
6
H7-hESC
6
HCT116
6
HEK293
6
HT-29
6
IMR-90
6
LNCaP clone FGC
6
MM.1S
6
WI38
6
choroid plexus epithelial cell
6
dermis lymphatic vessel endothelial cell
6
fibroblast of breast
6
globus pallidus
6
induced pluripotent stem cell
6
kidney glomerular epithelial cell
6
mast cell
6
mature neutrophil
6
mucosa of rectum
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
putamen
6
skeletal muscle fiber
6
superior temporal gyrus
6
urinary bladder
5
A172
Organ
6
connective tissue
Life stage
2
adult
1
unknown
Date released
2
February, 2024
1
February, 2021
1
March, 2020
1
May, 2022
1
October, 2019
Software used
2
macs
1
chromhmm
1
deeptools
1
encode-ccres
1
nospecificsoft_customcode
1
r
1
samtools
1
umitools
Lab
4
AMP-T2D consortium
2
Stephen Parker, UMich
Project
6
AMP
RFA
4
AMP
2
AMP2
biosample_term_name!
astrocyte
annotation_type!
binding sites
annotation_category!
Genetic variant effects
biosample_type!
in vitro differentiated cells
Showing 6 of 6 results
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Download
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR627LDJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR543XVO
released
Annotation file set
: Cell type gene expression mean TPM and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR139NCZ
released
Annotation file set
: ChromHMM 15-state model for Mesenchymal Stem Cell from ENCODE ChIP-seq data.
Lab:
AMP-T2D consortium
Project:
AMP