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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
candidate regulatory elements
1
chromatin state
Annotation Category
4
cis-regulatory elements
2
Genetic variant effects
1
Gene expression levels
1
Target gene links
Annotation type Category
2
ChIP-seq
2
snATAC-seq
1
DNase-seq
Available data
3
bed bed3+
1
bed bed9
1
bigBed bed9
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
in vitro differentiated cells
4
primary cell
Biosample term
105
monocyte
65
heart
63
stomach
58
kidney
53
brain
50
muscle of arm
49
lung
45
small intestine
44
muscle of leg
44
placenta
43
A549
43
adrenal gland
42
CD8-positive, alpha-beta T cell
42
large intestine
41
muscle of back
40
common myeloid progenitor, CD34-positive
39
left lung
34
retina
34
right lung
34
thymus
31
right kidney
30
renal cortex interstitium
30
renal pelvis
29
liver
28
B cell
27
left kidney
26
spinal cord
23
CD4-positive, alpha-beta memory T cell
23
heart left ventricle
23
spleen
20
MCF-7
20
breast cancer cell
20
pigmented layer of retina
18
K562
18
endothelial cell
18
fibroblast
16
adipose tissue
16
foreskin fibroblast
16
sigmoid colon
15
CD8-positive, alpha-beta memory T cell
15
foreskin keratinocyte
15
hepatocyte
15
keratinocyte
15
macrophage
14
HepG2
14
T cell
14
endothelial cell of umbilical vein
14
regulatory T cell
13
gastrocnemius medialis
13
mononuclear cell
13
pancreas
13
trophoblast cell
13
upper lobe of left lung
12
CD14-positive monocyte
12
CD4-positive, alpha-beta T cell
12
neuroblastoma cell
12
osteoblast
12
pericyte cell
12
psoas muscle
12
skeletal muscle myoblast
12
testis
12
thyroid gland
12
tibial nerve
11
bronchial epithelial cell
11
caudate nucleus
11
endothelial cell of hepatic sinusoid
11
excitatory neuron
11
fibroblast of cardiac tissue
11
fibroblast of lung
11
heart right ventricle
11
islet of Langerhans
11
mammary epithelial cell
11
natural killer cell
11
ovary
11
transverse colon
10
EndoC_BH1
10
Rhabdomyosarcoma
astrocyte
10
chorionic villus
10
gastric cancer cell
10
layer of hippocampus
10
muscle of trunk
10
pancreatic ductal cell
10
skeletal muscle tissue
10
temporal lobe
9
HeLa-S3
9
Peyer's patch
9
T-helper 1 cell
9
T-helper 17 cell
9
body of pancreas
9
coronary artery
9
endocrine pancreas
9
liposarcoma
9
neurosphere
9
prostate gland
9
substantia nigra
8
22Rv1
8
GM12878
8
H9
8
HEK293
8
SK-N-DZ
8
T-helper 2 cell
8
choroid plexus epithelial cell
8
esophagus squamous epithelium
8
fibroblast of dermis
8
left cardiac atrium
8
left renal cortex interstitium
8
pancreatic beta cell
8
skeletal muscle satellite cell
8
smooth muscle cell
8
tibial artery
7
B-lymphoblastoid cell line
7
GM06990
7
GM12864
7
GM12865
7
H1-hESC
7
HL-60
7
IMR-90
7
aorta
7
breast epithelium
7
colonic mucosa
7
epithelial cell of prostate
7
erythroblast
7
esophagus muscularis mucosa
7
fibroblast cell line
7
hepatic stellate cell
7
kidney tubule cell
7
left renal pelvis
7
mammary gland epithelial cell
7
mature neutrophil
7
omental fat pad
7
pancreatic acinar cell
7
retinal pigment epithelial cell
7
right renal pelvis
7
tongue
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
GM12875
6
GM19240
6
GM23248
6
HAP-1
6
HT-29
6
KARPAS-422 cell
6
LHCN-M2
6
MG63
6
MM.1S
6
NAMALWA cell
6
SW480
6
angular gyrus
6
ascending aorta
6
cardiac muscle cell
6
cerebellum
6
cingulate gyrus
6
dermis blood vessel endothelial cell
6
diffuse intrinsic pontine glioma
6
duodenal mucosa
6
fibroblast of villous mesenchyme
6
globus pallidus
6
lower leg skin
6
midbrain
6
neutrophil
6
right atrium auricular region
6
right renal cortex interstitium
6
skin fibroblast
6
thoracic aorta
6
trophoblast
5
Ammon's horn
5
CD14-positive, CD16-negative classical monocyte
5
Chondroid Chordoma
5
Daoy
5
Ewing sarcoma
5
GM08714
5
GM10248
5
GM10266
5
GM12891
5
GM12892
5
GM19238
5
GM19239
5
HUES6
5
HuH-7
5
Jurkat
5
KBM-7
5
LNCaP clone FGC
5
LoVo cell
5
OCI-LY1
5
PC-3
5
PC-9
5
SJSA1
5
SK-N-MC
5
T47D
5
WERI-Rb-1
5
acute myeloid leukemia
Organ
4
connective tissue
Life stage
2
adult
1
unknown
Date released
1
February, 2021
1
February, 2024
1
May, 2022
1
October, 2019
Software used
2
macs
1
chromhmm
1
encode-ccres
Lab
3
AMP-T2D consortium
1
Stephen Parker, UMich
Project
4
AMP
RFA
3
AMP
1
AMP2
biosample_term_name!
astrocyte
biosample_type!
in vitro differentiated cells
Showing 4 of 4 results
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Download
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR627LDJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR139NCZ
released
Annotation file set
: ChromHMM 15-state model for Mesenchymal Stem Cell from ENCODE ChIP-seq data.
Lab:
AMP-T2D consortium
Project:
AMP