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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
chromatin state
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
5
ChIP-seq
3
DNase-seq
Available data
3
bed bed3+
2
bed bed9
1
bigBed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
3
in vitro differentiated cells
2
primary cell
Biosample term
24
adipose tissue
18
omental fat pad
17
subcutaneous adipose tissue
6
hepatic stellate cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Fibroblast
5
Mesangial Cell
5
adipocyte
5
fibroblast of lung
5
mesenchymal stem cell
5
subcutaneous abdominal adipose tissue
4
GM23248
4
HT1080
4
bone tissue
4
cartilage tissue
4
fibroblast of dermis
3
adult endothelial progenitor cell
3
fibroblast of cardiac tissue
3
mesangial cell
3
visceral abdominal adipose tissue
2
cardiac fibroblast
2
articular chondrocyte
2
fibroblast
2
osteoblast
1
activated pancreatic stellate cell
1
cardiac fibroblast
1
cardiac ventricle fibroblast
1
kidney interstitial fibroblast
1
mesenchymal stem cell of adipose
1
pancreatic stellate cell
1
quiescent pancreatic stellate cell
Organ
5
connective tissue
Life stage
5
adult
4
embryonic
1
unknown
Date released
3
September, 2022
1
February, 2021
1
October, 2019
Software used
2
chromhmm
2
r
1
encode-ccres
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
biosample_term_name!
gastrocnemius medialis
Showing 5 of 5 results
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Download
FileSet
DSR329XEJ
released
Annotation file set
: Candidate regulatory elements for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR391CWH
released
Annotation file set
: Target gene predictions for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR625MZJ
released
Annotation file set
: Chromatin states for BSS01260 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR627LDJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR139NCZ
released
Annotation file set
: ChromHMM 15-state model for Mesenchymal Stem Cell from ENCODE ChIP-seq data.
Lab:
AMP-T2D consortium
Project:
AMP