Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
5
target gene predictions
1
caQTL
1
eQTL
1
variant allelic effects
Annotation Category
cis-regulatory elements
5
Target gene links
3
Genetic variant effects
Annotation type Category
4
ATAC-seq
2
DNase-seq
2
H3K27ac ChIP-Seq
2
snATAC-seq
1
RNA-seq
1
pCHi-C
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
8
hg19
2
GRCh38
Organism
8
Homo sapiens
Biosample type
6
primary cell
1
in vitro differentiated cells
1
stem cell
Biosample term
52
HeLa-S3
38
H1-hESC
19
HFFc6
19
islet of Langerhans
17
K562
15
CD14-positive monocyte
15
macrophage
12
endothelial cell
12
fibroblast
11
liver
11
monocyte
11
subcutaneous adipose tissue
10
pituitary stalk
10
smooth muscle cell
9
coronary artery
9
hepatocyte
9
pericyte cell
8
induced pluripotent stem cell
8
naive thymus-derived CD4-positive, alpha-beta T cell
7
GM12878
7
H9
7
adipose tissue
7
neutrophil
7
putamen
7
right atrium auricular region
7
tibial artery
7
tibial nerve
6
body of pancreas
6
caudate nucleus
6
dendritic cell
6
frontal cortex
6
iPSC derived cell line
6
lymphoblastoid cell line
6
lymphocyte
6
olfactory receptor cell
6
substantia nigra
5
Ammon's horn
5
CD8-positive, alpha-beta T cell
5
EndoC_BH1
5
adipocyte
5
amygdala
5
anterior cingulate cortex
5
ascending aorta
5
cerebellum
5
cerebellum (Hemisphere)
5
heart left ventricle
5
hypothalamus
5
nucleus accumbens
5
omental fat pad
5
pancreas
5
pancreatic delta cell
4
C1 segment of cervical spinal cord
4
CD4-positive helper T cell
4
CyT49
4
HUES8
4
T cell
4
adrenal gland
4
cardiomyocytes (cardiac muscle cell)
4
cartilage tissue
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endothelial cell of hepatic sinusoid
4
gastrocnemius medialis(Muscle - Skeletal)
4
keratinocyte
4
left ventricle myocardium
4
mesenchymal stem cell
4
pancreatic acinar cell
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic ductal cell
4
psoas muscle
4
right lobe of liver
3
CD4-positive, alpha-beta T cell
3
activated CD4-positive, alpha-beta T cell
3
astrocyte
3
basal cell
3
blood cell
3
brain
3
cardiac muscle cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
endothelial cell of umbilical vein
3
enterocyte
3
heart
3
heart right ventricle
3
myofibroblast cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
natural killer cell
3
ovary
3
pancreatic A cell
3
regulatory T cell
3
skin of body
3
small intestine
3
spleen
3
stomach
3
thymus
3
type B pancreatic cell
3
type I muscle cell
3
type II muscle cell
3
type II pneumocyte
2
cardiac fibroblast
2
muscle of leg
2
Adaptive / Maladaptive / Repairing Fibroblast
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
2
Afferent / Efferent Arteriole Endothelial Cell
2
B Cell
2
B cell
2
BJAB cell
2
Classical Dendritic Cell
2
Connecting Tubule Cell
2
Connecting Tubule Intercalated Cell Type A
2
Connecting Tubule Principal Cell
2
Cortical Thick Ascending Limb Cell
2
Cycling Endothelial Cell
2
Cycling Epithelial Cell
2
Cycling T Cell
2
Cytotoxic T Cell
2
Degenerative Connecting Tubule Cell
2
Degenerative Connecting Tubule Cell / Principal Cell
2
Degenerative Cortical Thick Ascending Limb Cell
2
Degenerative Distal Convoluted Tubule Cell
2
Degenerative Intercalated Cell Type A
2
Degenerative Peritubular Capillary Endothelial Cell
2
Degenerative Principal Cell
2
Degenerative Proximal Tubule Epithelial Cell
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
2
Degenerative Vascular Smooth Muscle Cell
2
Descending Thin Limb Cell Type 1
2
Distal Convoluted Tubule Cell Type 1
2
Fibroblast
2
Glomerular Capillary Endothelial Cell
2
HCT116
2
HepG2
2
Intercalated Cell Type A
2
Intercalated Cell Type B
2
Jurkat
2
Lymphatic Endothelial Cell
2
M2 Macrophage
2
MCF 10A cell
2
MIN6
2
Medullary Thick Ascending Limb Cell
2
Mesangial Cell
2
Monocyte
2
Monocyte-derived Cell
2
Myofibroblast
2
Natural Killer T Cell
2
Natural Killer T Cell Type 1
2
Natural Killer T Cell Type 2
2
Non-Classical Monocyte
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Parietal Epithelial Cell
2
Peritubular Capillary Endothelial Cell
2
Plasma Cell
2
Plasmacytoid Dendritic Cell
2
Podocyte
2
Principal Cell
2
Proximal Tubule Epithelial Cell Segment 1 and 2
2
Proximal Tubule Epithelial Cell Segment 3
2
Regulatory T Cell
2
Renin-positive Juxtaglomerular Granular Cell
2
Schwann cell
2
T Cell
2
T-cell
2
THP-1
2
Transitional Principal-Intercalated Cell
2
U937
2
Vascular Smooth Muscle Cell / Pericyte
2
activated CD8-positive, alpha-beta T cell
2
aorta
2
articular chondrocyte
2
blood
2
blood vessel smooth muscle cell
2
cardiac precursors (cardiac muscle cell)
2
dorsolateral prefrontal cortex
2
enteric smooth muscle cell
2
epithelial cell of esophagus
2
erythroblast
2
esophagus
2
fat cell
2
gabaergic neuron
2
glutamatergic neuron
2
goblet cell
2
kidney
2
luminal epithelial cell of mammary gland
2
lung
2
lymphocyte of B lineage (iPSC)
2
mammary gland epithelial cell
2
mast cell
2
megakaryocyte
2
memory B cell
2
mesendoderm
2
mesothelial cell
2
microglial cell
2
muscle
2
naive B cell
2
naive t cell
2
pancreatic polypeptide-secreting cell
2
parietal cell
2
peptic cell
Organ
4
connective tissue
4
epithelium
4
skin of body
Date released
2
February, 2024
2
May, 2021
2
November, 2021
1
March, 2020
1
October, 2022
Software used
r
4
abc
1
deeptools
1
deltasvm
1
eigenmt
1
nospecificsoft_customcode
1
qTLtools
1
rasqual
1
samtools
1
umitools
Lab
3
Bing Ren, UCSD
2
Jesse Engreitz, Stanford University
2
Stephen Parker, UMich
1
AMP-T2D consortium
Project
6
AMP
2
ENCODE
RFA
4
AMP
2
AMP2
2
ENCODE3
annotation_category!
cis-regulatory elements
software_used.software.name!
r
Showing 8 of 8 results
table-tab-icon
matrix-icon
Download
FileSet
DSR681TKD
released
Annotation file set
: Target gene predictions of Keratinocyte 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR385FIQ
released
Annotation file set
: Target gene predictions of Keratinocyte 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR033HJN
released
Annotation file set
: Expression QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR926EGV
released
Annotation file set
: enhancer-gene predicton of keratinocyte-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR684JHV
released
Annotation file set
: Variant allelic effects annotation of Keratinocytes from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP