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Schema
Citing CMDGA
Clear Filters
Annotation type
3
candidate regulatory elements
1
eQTL
Annotation Category
3
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
3
ChIP-seq
3
DNase-seq
1
RNA-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
2
primary cell
1
in vitro differentiated cells
1
tissue
Biosample term
22
stomach
18
heart
18
lung
17
muscle of arm
15
adrenal gland
15
brain
15
kidney
15
muscle of back
15
small intestine
14
common myeloid progenitor, CD34-positive
14
large intestine
14
muscle of leg
13
left lung
13
placenta
11
renal cortex interstitium
11
right lung
10
renal pelvis
10
right kidney
10
spleen
9
hematopoietic multipotent progenitor cell
9
islet of Langerhans
9
left kidney
9
thymus
8
CD4-positive, alpha-beta T cell
8
spinal cord
7
CD8-positive, alpha-beta T cell
7
foreskin keratinocyte
7
heart left ventricle
7
liver
7
macrophage
6
B cell
6
H9
6
lymphoblastoid cell line
5
CD4-positive, alpha-beta memory T cell
5
cardiac muscle cell
5
foreskin fibroblast
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
ovary
5
sigmoid colon
5
subcutaneous abdominal adipose tissue
5
substantia nigra
5
testis
5
thyroid gland
5
transverse colon
4
CD14-positive monocyte
4
MCF-7
4
Peyer's patch
4
T-cell
4
T-helper 1 cell
4
WI38
4
body of pancreas
4
chorionic villus
4
dermis blood vessel endothelial cell
4
endothelial cell of umbilical vein
4
esophagus muscularis mucosa
4
esophagus squamous epithelium
4
gastrocnemius medialis
4
gastroesophageal sphincter
4
layer of hippocampus
4
left renal cortex interstitium
4
left renal pelvis
4
lower leg skin
4
muscle of trunk
4
natural killer cell
4
neurosphere
4
pancreas
4
peripheral blood mononuclear cell
4
regulatory T cell
4
retina
4
right renal pelvis
4
skeletal muscle tissue
4
tibial nerve
4
trophoblast cell
4
upper lobe of left lung
3
A549
3
MCF 10A
3
T-helper 17 cell
3
T-helper 2 cell
3
blood cell
3
breast epithelium
3
cardiac fibroblast
3
caudate nucleus
3
endocrine pancreas
3
esophagus
3
fibroblast of lung
3
foreskin melanocyte
3
heart right ventricle
3
mammary epithelial cell
3
mesenchymal stem cell
3
mesodermal cell
3
monocyte
3
neutrophil
3
omental fat pad
3
parathyroid adenoma
3
prostate gland
3
psoas muscle
3
putamen
3
right renal cortex interstitium
3
skin of body
3
subcutaneous adipose tissue
3
suprapubic skin
3
temporal lobe
3
uterus
3
vagina
2
22Rv1
2
AG10803
2
HEK293
2
HeLa-S3
2
LNCAP
2
NAMALWA
2
SK-N-DZ
2
SK-N-SH
2
T cell
2
adipocyte
2
adipose tissue
2
angular gyrus
2
aorta
2
articular chondrocyte
2
ascending aorta
2
bronchial epithelial cell
2
cardiac myoblast
2
cardiovascular progenitor cell
2
cerebellum
2
chorion
2
cingulate gyrus
2
colonic mucosa
2
coronary artery
2
dermis microvascular lymphatic vessel endothelial cell
2
duodenal mucosa
2
endodermal cell
2
epithelial cell of prostate
2
eye
2
fibroblast
2
fibroblast of breast
2
iPSC derived cell line
2
lung microvascular endothelial cell
2
middle frontal area 46
2
mucosa of rectum
2
muscle
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
neural cell
2
neuroepithelial stem cell
2
neuronal stem cell
2
placental basal plate
2
right atrium auricular region
2
skeletal muscle myoblast
2
smooth muscle cell
2
stomach smooth muscle
2
thoracic aorta
2
tibial artery
2
tongue
2
trophoblast
1
A172
1
A673
1
ACC112
1
ACHN
1
AG04449
1
AG04450
1
AG09309
1
AG09319
1
Ammon's horn
1
BE2C
1
BJ
1
C4-2B
1
CD1c-positive myeloid dendritic cell
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD8-positive, alpha-beta memory T cell
1
CMK
1
Caco-2
1
Caki2
1
D721Med
1
DND-41
1
DOHH2
1
Daoy
1
EH
1
EL
1
ELF-1
1
ELR
1
G401
1
GM04503
1
GM04504
1
GM06990
1
GM08714
1
GM10248
1
GM10266
1
GM12801
1
GM12864
1
GM12865
1
GM12873
1
GM12874
1
GM12875
1
GM12878
1
GM13976
1
GM13977
1
GM20000
1
GM23248
1
GM23338
1
H1
Organ
3
connective tissue
1
liver
Life stage
2
adult
1
embryonic
Date released
3
February, 2021
1
February, 2024
Software used
8
r
5
macs
4
chromhmm
3
encode-ccres
1
abc
1
deeptools
1
eigenmt
1
gtex_eqtl:V8
1
gtex_finemapping_eQTL:caveman
1
gtex_finemapping_eQTL:caviar
1
gtex_finemapping_eQTL:dapg
1
nospecificsoft_customcode
1
qTLtools
1
rasqual
1
samtools
1
umitools
Lab
3
AMP-T2D consortium
1
Stephen Parker, UMich
Project
4
AMP
RFA
3
AMP
1
AMP2
Showing 4 of 4 results
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Download
FileSet
DSR839LHJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE right lobe of liver
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR718ELE
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR627LDJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR033HJN
released
Annotation file set
: Expression QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP