Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
caQTL
1
candidate regulatory elements
1
eQTL
1
gene expression
1
target gene predictions
Annotation Category
3
cis-regulatory elements
2
Genetic variant effects
1
Gene expression levels
1
Target gene links
Annotation type Category
3
snATAC-seq
1
ChIP-seq
1
DNase-seq
1
RNA-seq
1
pCHi-C
1
snRNA-seq
Available data
6
bed bed3+
1
bigWig
File set status
7
released
Genome assembly (visualization)
8
hg19
GRCh38
Organism
7
Homo sapiens
Biosample type
in vitro differentiated cells
6
primary cell
1
stem cell
Biosample term
66
heart
66
stomach
56
kidney
52
brain
51
lung
50
muscle of arm
48
CD8-positive, alpha-beta T cell
47
adrenal gland
47
small intestine
45
placenta
44
A549
43
large intestine
42
muscle of leg
41
common myeloid progenitor, CD34-positive
41
muscle of back
39
left lung
39
liver
37
islet of Langerhans
37
thymus
35
retina
34
right lung
31
monocyte
31
right kidney
30
renal cortex interstitium
30
renal pelvis
29
B cell
27
CD14-positive monocyte
27
left kidney
27
spinal cord
25
spleen
24
adipose tissue
23
CD4-positive, alpha-beta memory T cell
23
regulatory T cell
22
EndoC_BH1
21
MCF-7
21
endothelial cell
21
epithelial cell of proximal tubule
21
heart left ventricle
20
breast cancer cell
20
pigmented layer of retina
19
K562
19
glomerular endothelial cell
18
T-helper 1 cell
17
T-helper 17 cell
17
foreskin fibroblast
17
sigmoid colon
16
H1-hESC
16
natural killer cell
16
ovary
16
pancreatic ductal cell
15
CD8-positive, alpha-beta memory T cell
15
body of pancreas
15
foreskin keratinocyte
15
hepatocyte
15
keratinocyte
15
psoas muscle
14
endothelial cell of umbilical vein
14
gastrocnemius medialis
14
mononuclear cell
14
pancreas
14
pancreatic alpha cell
14
tibial nerve
14
transverse colon
14
trophoblast cell
13
CD4-positive, alpha-beta T cell
13
heart right ventricle
13
pancreatic beta cell
13
pancreatic delta cell
13
skeletal muscle tissue
13
subcutaneous adipose tissue
13
testis
13
thyroid gland
13
upper lobe of left lung
12
T-helper 2 cell
12
fibroblast of lung
12
layer of hippocampus
12
mammary epithelial cell
12
muscle of trunk
12
neuroblastoma cell
12
neutrophil
12
osteoblast
12
skeletal muscle myoblast
11
T cell
11
caudate nucleus
11
chorionic villus
11
macrophage
11
naive thymus-derived CD4-positive, alpha-beta T cell
10
HeLa-S3
10
HepG2
10
Peyer's patch
10
Rhabdomyosarcoma
10
bronchial epithelial cell
10
endocrine pancreas
10
fibroblast of cardiac tissue
10
gastric cancer cell
10
pancreatic acinar cell
10
prostate gland
9
GM12878
9
H9
9
epithelial cell of prostate
9
fibroblast of dermis
9
glomerular visceral epithelial cell
9
liposarcoma
9
neurosphere
8
22Rv1
8
B-lymphoblastoid cell line
8
HEK293
8
aorta
8
breast epithelium
8
cardiac muscle cell
8
coronary artery
8
fibroblast cell line
8
left renal cortex interstitium
8
omental fat pad
8
pituitary stalk
8
right atrium auricular region
8
right renal pelvis
8
temporal lobe
8
trophoblast
7
GM06990
7
GM12864
7
GM12865
7
HAP-1
7
HT-29
7
IMR-90
7
Jurkat
7
colonic mucosa
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
left renal pelvis
7
lower leg skin
7
mammary gland epithelial cell
7
mature neutrophil
7
substantia nigra
7
tibial artery
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
Ammon's horn
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
KARPAS-422 cell
6
LNCAP
6
NAMALWA cell
6
SK-N-MC
6
cerebellum
6
choroid plexus epithelial cell
6
cingulate gyrus
6
diffuse intrinsic pontine glioma
6
endometrium adenocarcinoma
6
esophagus
6
eye
6
fibroblast
6
fibroblast of pulmonary artery
6
immortal human breast epithelial cell line cell
6
induced pluripotent stem cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
occipital lobe
6
pancreatic stellate cell
6
parathyroid adenoma
6
right renal cortex interstitium
6
skeletal muscle satellite cell
6
skin fibroblast
6
thoracic aorta
6
tongue
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
Chondroid Chordoma
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Daoy
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
Organ
7
connective tissue
Life stage
1
adult
1
unknown
Date released
3
February, 2024
1
February, 2021
1
March, 2020
1
May, 2022
1
October, 2022
Software used
2
macs
1
deeptools
1
eigenmt
1
encode-ccres
1
nospecificsoft_customcode
1
qTLtools
1
r
1
rasqual
1
samtools
1
umitools
Lab
4
Stephen Parker, UMich
3
AMP-T2D consortium
Project
7
AMP
RFA
4
AMP2
3
AMP
biosample_type!
in vitro differentiated cells
assembly!
GRCh38
Showing 7 of 7 results
table-tab-icon
matrix-icon
Download
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR627LDJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR033HJN
released
Annotation file set
: Expression QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR543XVO
released
Annotation file set
: Cell type gene expression mean TPM and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP